Hg_chrom7_TN10mRNA_13551
Organism: Heterodera glycines Gene Locus: chr7:2935727-2940056 Feature type: polypeptideProtein Sequence
Length: 348
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 0.869 | 1.045 | 0.694 | 0.814 | 1.4 | 0.718 | 0.718 | 0.702 | 1.01 | 0.479 | 1.859 | 0.878 | 1.326 | 1.818 | 1.273 | 1.272 | 0.697 | 1.768 | 0.93 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12781
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.124
|
0.175
|
0.041
|
0.222
|
0.108
|
0.071
|
0.161
|
0.066
|
0.188
|
0.884
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004527
|
1.000
|
2.000
|
Hsc_gene_747.t1;Hsc_gene_747.t2
|
Hsc_gene_747.t1
|
— |
Q9XU75.2 Putative carboxypeptidase suro-1 [Caenorhabditis elegans]
|
AVA09650.1 putative effector protein [Heterodera avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004181|GO:0006508|GO:0008270
|
GO:0003674_0.672|GO:0005575_0.638|GO:0110165_0.630|GO:0008150_0.610|GO:0003824_0.520
|
IPR000834+2-163_5-166+|IPR003582+307-344_307-345_308-344+
|
SM00254+307-345+|SM00631+2-163+
|
PF00246+5-166+Zinc_carboxypeptidase|PF01549+307-344+ShK_domain-like
|
G3DSA:3.40.630.10:FF:000084+3-179+Carboxypeptidase_B2
|
PTHR11705+5-176+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
173-302
|
2.000
|
1-172;303-348
|
8cpa_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
39160.070
|
8.562
|
7.500
|
24.138
|
10.057
|
50.000
|
50.000
|
13.506
|
10.632
|
53.736
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
2893.551
|
163.806
|
412.554
|
4258.050
|
7860.925
|
12586.287
|
1571.955
|
1916.894
|
187.529
|
1729.712
|
1068.777
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.104
|
4.563
|
3.475
|
0.853
|
0.695
|
-2.994
|
-2.826
|
— |
-3.338
|
4.705
|
2.466
|
— | — |
No JSON data available for plots.