Hg_chrom7_TN10mRNA_13559
Organism: Heterodera glycines Gene Locus: chr7:2984170-2989439 Feature type: polypeptideProtein Sequence
Length: 396
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.881 | 0.998 | 0.781 | 0.697 | 0.842 | 1.166 | 0.872 | 3.283 | 1.459 | 1.467 | 0.612 | 1.634 | 1.894 | 0.389 | 0.567 | 1.263 | 0.869 | 0.995 | 0.194 | 0.446 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12788
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.043
|
0.070
|
0.015
|
0.078
|
0.258
|
0.654
|
0.463
|
0.031
|
0.680
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004531
|
2.000
|
1.000
|
Hsc_gene_757.t1
|
Hsc_gene_756.t1;Hsc_gene_757.t1
|
— |
P59889.1 Zinc transporter ZIP1 [Danio rerio]
|
KAI1722308.1 ZIP zinc transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0030001|GO:0046873|GO:0055085
|
GO:0008150_0.918|GO:0005575_0.800|GO:0110165_0.800|GO:0051179_0.795|GO:0003674_0.788|GO:0006810_0.783|GO:0051234_0.783|GO:0016020_0.759|GO:0009987_0.712|GO:0071944_0.704|GO:0005886_0.695|GO:0006811_0.678|GO:0006812_0.663|GO:0030001_0.663|GO:0000041_0.631|GO:0006829_0.624|GO:0055085_0.552|GO:0034220_0.515|GO:0005215_0.507|GO:0022857_0.507|GO:0098660_0.507
|
IPR003689+6-378+
|
— |
PF02535+6-378+ZIP_Zinc_transporter
|
— |
PTHR11040+4-378+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
127-190;396-396
|
2.000
|
1-126;191-395
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.527
|
43664.920
|
6.691
|
3.000
|
22.727
|
15.152
|
45.707
|
54.293
|
13.384
|
9.343
|
48.232
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
lightyellow
|
765.629
|
385.067
|
394.226
|
402.297
|
627.532
|
716.025
|
552.067
|
546.621
|
39.312
|
1961.206
|
1137.537
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.196
|
— | — |
0.609
|
0.205
|
-0.365
|
-0.497
|
— |
-5.775
|
— | — | — | — |
No JSON data available for plots.