Hg_chrom7_TN10mRNA_13560
Organism: Heterodera glycines Gene Locus: chr7:2998306-3010499 Feature type: polypeptideProtein Sequence
Length: 1,413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.045 | 1.053 | 0.862 | 0.805 | 0.767 | 1.597 | 0.96 | 1.38 | 0.928 | 1.348 | 0.472 | 0.957 | 0.983 | 1.279 | 1.401 | 1.254 | 0.754 | 0.901 | 0.98 | 0.354 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12789
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRHR
|
23-45
|
0.960
|
75-95
|
1.000
|
— | — |
0.000
|
— | — |
0.215
|
0.033
|
0.024
|
0.252
|
0.232
|
0.303
|
0.273
|
0.090
|
0.748
|
0.167
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0010999
|
1.000
|
1.000
|
Hsc_gene_758.t1
|
— | — | — |
KAI1731108.1 CRE-BAM-2 protein [Ditylenchus destructor]
|
No
|
-0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.937|GO:0110165_0.937|GO:0016020_0.869|GO:0071944_0.853|GO:0005886_0.831
|
IPR001791+335-421+|IPR013320+346-434+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1169-1413
|
1.000
|
1-1168
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.878
|
153732.070
|
8.073
|
28.500
|
22.081
|
8.776
|
46.214
|
53.786
|
12.739
|
9.342
|
54.636
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
1900.395
|
3010.138
|
1302.226
|
649.698
|
527.406
|
1680.364
|
1162.614
|
2198.518
|
2982.546
|
2128.207
|
2494.353
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.437
|
-2.349
|
-0.895
|
-0.332
|
1.686
|
-0.521
|
— |
-0.778
|
— |
-2.026
|
— | — | — |
No JSON data available for plots.