Hg_chrom7_TN10mRNA_13562
Organism: Heterodera glycines Gene Locus: chr7:3021795-3025424 Feature type: polypeptideProtein Sequence
Length: 465
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.65 | 1.0 | 0.704 | 0.964 | 1.541 | 0.772 | 0.563 | 1.183 | 1.625 | 1.656 | 1.564 | 1.012 | 1.254 | 0.579 | 1.317 | 0.983 | 0.74 | 0.489 | 1.82 | 0.443 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12790
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKILPVASELVKGKIK,RKRANFAFLSIKLRRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.708
|
0.170
|
0.073
|
0.398
|
0.214
|
0.080
|
0.117
|
0.035
|
0.139
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000875
|
5.000
|
1.000
|
Hsc_gene_9275.t1
|
Hsc_gene_9275.t1
|
— | — |
KAI1695796.1 zinc finger BED domain-containing protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.909|GO:0005622_0.879|GO:0003674_0.845|GO:0016020_0.843|GO:0043226_0.838|GO:0043229_0.825|GO:0005737_0.790|GO:0005488_0.786|GO:0043227_0.786|GO:0043231_0.755|GO:0005515_0.742|GO:0042802_0.668|GO:0005634_0.639|GO:0031974_0.593|GO:0043233_0.593|GO:0070013_0.590|GO:0031981_0.585|GO:0005654_0.568
|
IPR012337+155-457+|IPR052035+13-243+
|
— | — | — |
PTHR46481+13-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-465
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
53892.680
|
9.546
|
22.500
|
32.258
|
10.753
|
50.968
|
49.032
|
19.140
|
13.118
|
38.925
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
362.919
|
63.221
|
64.428
|
74.053
|
48.562
|
54.513
|
16.820
|
44.863
|
321.402
|
1209.298
|
828.771
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.309
|
-0.640
|
— |
-1.688
|
— |
-1.275
|
— | — |
-4.230
|
— | — |
No JSON data available for plots.