Hg_chrom7_TN10mRNA_13563
Organism: Heterodera glycines Gene Locus: chr7:3023317-3025093 Feature type: polypeptideProtein Sequence
Length: 465
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.625 | 1.05 | 0.743 | 1.038 | 1.29 | 0.937 | 0.461 | 1.075 | 1.673 | 1.54 | 1.564 | 1.392 | 1.374 | 0.538 | 1.361 | 0.983 | 0.776 | 0.554 | 1.985 | 0.506 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12790
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RKILPVASELVKGKIK,RKRANFAFLSIKLRRI
|
— | — | — | — | — | — |
0.000
|
— | — |
0.580
|
0.271
|
0.022
|
0.408
|
0.223
|
0.112
|
0.171
|
0.060
|
0.085
|
0.176
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000875
|
5.000
|
1.000
|
Hsc_gene_9275.t1
|
Hsc_gene_9275.t1
|
— | — |
KAI1695796.1 zinc finger BED domain-containing protein 1 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.915|GO:0110165_0.910|GO:0005622_0.865|GO:0016020_0.844|GO:0003674_0.834|GO:0043226_0.826|GO:0043229_0.807|GO:0005488_0.782|GO:0043227_0.778|GO:0005737_0.770|GO:0043231_0.756|GO:0005515_0.738|GO:0042802_0.666|GO:0005634_0.619|GO:0031974_0.578|GO:0043233_0.578|GO:0070013_0.577|GO:0031981_0.576|GO:0005654_0.562
|
IPR012337+155-389+|IPR052035+13-243+
|
— | — | — |
PTHR46481+13-243+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-465
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.607
|
54325.450
|
9.958
|
29.000
|
30.968
|
11.398
|
50.753
|
49.247
|
19.140
|
11.828
|
38.925
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
362.919
|
63.221
|
64.428
|
74.053
|
48.562
|
54.513
|
16.820
|
44.863
|
321.402
|
1209.298
|
828.771
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.309
|
-0.640
|
— |
-1.688
|
— |
-1.275
|
— | — |
-4.230
|
— | — |
No JSON data available for plots.