Hg_chrom7_TN10mRNA_13566
Organism: Heterodera glycines Gene Locus: chr7:3043597-3045146 Feature type: polypeptideProtein Sequence
Length: 143
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.894 | 1.301 | 0.89 | 0.241 | 0.583 | 0.897 | 0.916 | 2.797 | 1.554 | 1.134 | 0.636 | 2.879 | 1.36 | 0.269 | 0.856 | 1.898 | 0.917 | 0.954 | 0.0 | 0.206 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12793
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.099
|
0.239
|
0.027
|
0.293
|
0.258
|
0.613
|
0.241
|
0.024
|
0.395
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004531
|
2.000
|
1.000
|
Hsc_gene_757.t1
|
Hsc_gene_757.t1
|
— |
G3X943.1 Zinc transporter ZIP2 [Mus musculus]
|
KAI1722308.1 ZIP zinc transporter domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020|GO:0030001|GO:0046873|GO:0055085
|
GO:0008150_0.918|GO:0005575_0.823|GO:0110165_0.814|GO:0003674_0.791|GO:0016020_0.761|GO:0051179_0.744|GO:0009987_0.741|GO:0051234_0.738|GO:0006810_0.736|GO:0006811_0.679|GO:0006812_0.676|GO:0030001_0.675|GO:0000041_0.674|GO:0006829_0.670|GO:0071944_0.624|GO:0005886_0.613|GO:0055085_0.575|GO:0034220_0.564|GO:0098660_0.564|GO:0098655_0.562|GO:0098662_0.562|GO:0071577_0.557|GO:0005215_0.549|GO:0022857_0.549|GO:0005385_0.541|GO:0008324_0.541|GO:0015075_0.541|GO:0015318_0.541|GO:0022890_0.541|GO:0046873_0.541|GO:0046915_0.541
|
IPR003689+54-137+
|
— |
PF02535+54-137+ZIP_Zinc_transporter
|
— |
PTHR11040+59-133+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
140-143
|
1.000
|
1-139
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.852
|
15489.590
|
7.560
|
4.000
|
22.378
|
11.189
|
50.350
|
49.650
|
13.986
|
8.392
|
53.147
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
94.487
|
8.267
|
9.602
|
8.264
|
6.851
|
10.893
|
21.497
|
21.563
|
1.028
|
380.006
|
217.587
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.992
|
0.879
|
— |
-6.036
|
— | — | — | — |
No JSON data available for plots.