SCN Proteipedia

Hg_chrom7_TN10mRNA_13568

Organism: Heterodera glycines Gene Locus: chr7:3051609-3053801 Feature type: polypeptide

Protein Sequence

Length: 128

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.636	0.908	0.994	1.078	1.042	1.402	0.651	1.953	1.389	1.056	0.592	1.838	1.519	1.352	1.116	0.781	0.512	1.539	2.404	0.0	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12795	—	—	1.778	2.000	2.000	1.000	2.000	2.000	2.000	1.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.887

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.389	0.672	0.118	0.609	0.342	0.143	0.126	0.097	0.126	0.145

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000610	5.000	2.000	Hsc_gene_751.t1;Hsc_gene_752.t1	Hsc_gene_748.t1;Hsc_gene_748.t2;Hsc_gene_751.t1;Hsc_gene_752.t1	—	Q2TBQ0.2 Mitochondrial dimethyladenosine transferase 1 [Bos taurus]	KAI6223620.1 RRNA adenine N(6)-methyltransferase [Aphelenchoides fujianensis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000154\|GO:0000179	GO:0008150_0.928\|GO:0005575_0.886\|GO:0110165_0.874\|GO:0005622_0.809\|GO:0016020_0.795\|GO:0009987_0.776\|GO:0008152_0.769\|GO:0044238_0.752\|GO:0043226_0.750\|GO:0043227_0.730\|GO:0043229_0.729\|GO:0043231_0.713\|GO:0044237_0.671\|GO:0009058_0.667\|GO:0043170_0.667\|GO:0044249_0.652\|GO:0005737_0.649\|GO:0009059_0.644\|GO:0010467_0.643\|GO:0006139_0.601\|GO:0003674_0.570\|GO:0071840_0.530\|GO:0034654_0.515\|GO:0090304_0.512\|GO:0043412_0.509\|GO:0141187_0.509\|GO:0016070_0.508\|GO:0032774_0.507	IPR001737+1-128_2-117_11-110+\|IPR020596+13-41+\|IPR020598+1-126+\|IPR029063+1-124_1-127+	SM00650+1-126+	PF00398+11-110+Ribosomal_RNA_adenine_dimethylase	—	PTHR11727+2-117+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-128	6aax_C	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.517	14566.820	6.319	-0.500	25.000	12.500	42.969	57.031	13.281	11.719	49.219

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	blue	72.924	29.965	41.760	27.024	18.135	24.200	22.908	26.440	22.684	230.620	141.505

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	—	-0.519	-0.607	—	—	—	—	-3.451	—	-3.256	—	—

No JSON data available for plots.

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