SCN Proteipedia

Hg_chrom7_TN10mRNA_13569

Organism: Heterodera glycines Gene Locus: chr7:3057761-3062283 Feature type: polypeptide

Protein Sequence

Length: 361

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.548	0.644	1.007	0.764	0.97	1.065	0.528	1.801	1.108	1.31	0.63	2.607	2.078	1.385	1.639	0.554	0.954	1.259	0.426	0.652	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12796	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	25-Not_Clustered	0.484

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.190	0.924	0.035	0.235	0.040	0.049	0.043	0.043	0.072	0.047

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000610	5.000	2.000	Hsc_gene_751.t1;Hsc_gene_752.t1	Hsc_gene_3251.t1;Hsc_gene_748.t1;Hsc_gene_748.t2;Hsc_gene_752.t1;Hsc_gene_7897.t1;Hsc_gene_7897.t2	—	P91424.2 Dimethyladenosine transferase 1, mitochondrial [Caenorhabditis elegans]	KHN76642.1 Dimethyladenosine transferase 1, mitochondrial [Toxocara canis]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000154\|GO:0000179	GO:0008150_0.944\|GO:0009987_0.893\|GO:0005575_0.861\|GO:0110165_0.855\|GO:0008152_0.817\|GO:0005622_0.805\|GO:0044237_0.793\|GO:0016020_0.790\|GO:0044238_0.790\|GO:0009058_0.771\|GO:0043170_0.761\|GO:0044249_0.753\|GO:0043226_0.749\|GO:0009059_0.734\|GO:0043229_0.729\|GO:0043227_0.726\|GO:0010467_0.721\|GO:0005737_0.720\|GO:0043231_0.703\|GO:0003674_0.680\|GO:0005488_0.582\|GO:0003824_0.569\|GO:0071840_0.565\|GO:0006139_0.563\|GO:0043412_0.550\|GO:0034654_0.547\|GO:0090304_0.545\|GO:0141187_0.539\|GO:0016070_0.538\|GO:0032774_0.536\|GO:0044085_0.529\|GO:0005739_0.524\|GO:0006396_0.515\|GO:0000154_0.509\|GO:0006364_0.509\|GO:0009451_0.509\|GO:0016072_0.509\|GO:0022613_0.509\|GO:0042254_0.509\|GO:0016740_0.502	IPR001737+9-308_25-304_27-292+\|IPR020598+39-227+\|IPR023165+233-320+\|IPR029063+2-231_23-304+	SM00650+39-227+	PF00398+27-292+Ribosomal_RNA_adenine_dimethylase	G3DSA:3.40.50.150:FF:000109+1-231+rRNA_adenine_N(6)-methyltransferase	PTHR11727+9-308+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-361	9g5b_c	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.614	41864.820	8.126	9.500	27.147	13.850	43.767	56.233	15.789	11.357	44.875

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	246.434	382.833	391.361	320.475	378.235	262.500	318.893	310.426	79.806	131.524	109.359

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.199	-0.394	-0.178	0.207	-0.512	0.292	—	—	—	—	—	—	—

No JSON data available for plots.

Back to Browser