Hg_chrom7_TN10mRNA_13570
Organism: Heterodera glycines Gene Locus: chr7:3062937-3065195 Feature type: polypeptideProtein Sequence
Length: 233
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.749 | 0.798 | 1.171 | 0.296 | 1.216 | 2.091 | 0.715 | 1.717 | 1.335 | 1.276 | 0.975 | 1.515 | 1.431 | 0.66 | 1.314 | 0.797 | 0.704 | 0.91 | 0.0 | 0.757 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12797
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
cytoplasm|mitochondrion
|
— | — |
11-36
|
0.982
|
32-54
|
0.981
|
— | — |
0.000
|
— | — |
0.133
|
0.770
|
0.082
|
0.505
|
0.068
|
0.165
|
0.082
|
0.068
|
0.121
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011000
|
1.000
|
1.000
|
Hsc_gene_753.t1
|
Hsc_gene_753.t1;Hsc_gene_753.t2
|
— |
P31006.2 Guanylate kinase [Sus scrofa]
|
KAI6192900.1 Guanylate kinase [Aphelenchoides fujianensis]
|
No
|
-0.140
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004385|GO:0006163
|
GO:0008150_0.844|GO:0009987_0.713|GO:0005575_0.683|GO:0110165_0.661|GO:0003674_0.605|GO:0005622_0.547|GO:0043226_0.511|GO:0016020_0.509
|
IPR008144+34-217+|IPR008145+33-220_34-217+|IPR017665+36-216+|IPR027417+29-227_35-219+
|
SM00072+33-220+
|
PF00625+34-217+Guanylate_kinase
|
G3DSA:3.40.50.300:FF:000776+27-221+Guanylate_kinase_2
|
PTHR23117+29-218+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
228-233
|
1.000
|
1-227
|
8pts_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.494
|
26634.290
|
6.915
|
2.000
|
30.043
|
11.159
|
51.502
|
48.498
|
16.309
|
13.734
|
42.489
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey60
|
1155.945
|
408.531
|
1296.155
|
734.540
|
709.788
|
1032.004
|
1563.748
|
1691.761
|
2371.527
|
489.917
|
1296.321
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.438
|
0.709
|
-0.712
|
— |
0.554
|
0.610
|
0.609
|
— | — |
-1.512
|
— | — | — |
No JSON data available for plots.