Hg_chrom7_TN10mRNA_13579
Organism: Heterodera glycines Gene Locus: chr7:3123772-3129291 Feature type: polypeptideProtein Sequence
Length: 645
(Signal peptide: 1-37)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.262 | 1.118 | 0.789 | 1.23 | 0.62 | 0.716 | 0.849 | 1.24 | 0.792 | 1.069 | 0.446 | 1.094 | 1.077 | 1.252 | 1.234 | 1.506 | 1.372 | 0.869 | 0.358 | 0.73 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12804
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.797
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
nucleus
|
PVCKRRV,KRLPRSYLKKIPTKKYRKG,ERRRLARKRLPRSYLKKIPTKKYRK
|
— | — | — | — |
1-37
|
0.571
|
0.885
|
1.000
|
1.000
|
0.082
|
0.053
|
0.021
|
0.179
|
0.416
|
0.575
|
0.329
|
0.026
|
0.585
|
0.049
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003880
|
2.000
|
1.000
|
Hsc_gene_2076.t1
|
Hsc_gene_2076.t1
|
— |
Q9VI20.1 E3 ubiquitin-protein ligase Godzilla [Drosophila melanogaster]
|
KAI1731106.1 ring finger domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.842|GO:0005575_0.830|GO:0110165_0.830|GO:0016020_0.681|GO:0005622_0.655|GO:0009987_0.640|GO:0003674_0.637|GO:0065007_0.588|GO:0050789_0.575|GO:0043226_0.549|GO:0050794_0.548|GO:0071944_0.548|GO:0043229_0.540|GO:0005886_0.533|GO:0043227_0.512|GO:0043231_0.512|GO:0005737_0.502
|
IPR001841+260-303_261-302_261-303+|IPR003137+112-174+|IPR013083+240-312+|IPR051653+233-318+
|
SM00184+261-302+
|
PF02225+112-174+PA_domain|PF13639+260-303+Ring_finger_domain
|
G3DSA:3.30.40.10:FF:000429+240-309+E3_ubiquitin-protein_ligase_RNF13
|
PTHR47168+233-318+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
307-598;637-645
|
2.000
|
1-306;599-636
|
5zc4_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.906
|
68800.590
|
8.005
|
14.000
|
19.535
|
9.302
|
46.047
|
53.953
|
11.473
|
8.062
|
61.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
1404.144
|
2431.543
|
1802.641
|
1443.737
|
1367.801
|
1990.611
|
2275.838
|
2001.584
|
1081.275
|
339.516
|
657.412
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.660
|
-0.889
|
-0.212
|
— |
0.556
|
0.203
|
— |
0.327
|
— | — | — | — | — |