Hg_chrom7_TN10mRNA_13580
Organism: Heterodera glycines Gene Locus: chr7:3130185-3134423 Feature type: polypeptideProtein Sequence
Length: 483
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.794 | 1.733 | 0.979 | 0.571 | 1.035 | 1.168 | 0.739 | 2.174 | 0.598 | 1.007 | 0.533 | 1.096 | 0.805 | 1.433 | 1.268 | 1.508 | 0.577 | 1.192 | 0.478 | 0.792 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12805
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.872
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKIRLGIEGYPTHKEKIKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.417
|
0.267
|
0.038
|
0.571
|
0.160
|
0.215
|
0.266
|
0.068
|
0.254
|
0.053
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011001
|
1.000
|
1.000
|
Hsc_gene_2075.t1
|
Hsc_gene_2075.t1
|
— |
Q9BSF8.2 BTB/POZ domain-containing protein 10 [Homo sapiens]
|
KAI1731105.1 BTB/POZ domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.900|GO:0110165_0.891|GO:0005622_0.832|GO:0008150_0.734|GO:0009987_0.684|GO:0065007_0.683|GO:0050789_0.675|GO:0050794_0.669|GO:0048518_0.585|GO:0048522_0.569|GO:0005737_0.528
|
IPR000210+60-192+|IPR011333+40-190_60-188+|IPR039885+62-93_123-193+|IPR039886+123-369+
|
SM00225+60-192+
|
PF16017+62-93_123-193+BTB/POZ_domain
|
— |
PTHR21637+123-369+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-61;336-483
|
1.000
|
62-335
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.855
|
53326.170
|
6.618
|
1.500
|
25.673
|
10.559
|
51.760
|
48.240
|
14.079
|
11.594
|
56.936
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1005.887
|
1236.480
|
1038.424
|
1097.279
|
1116.615
|
1009.263
|
1401.982
|
973.495
|
349.645
|
1185.947
|
827.532
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.481
|
-0.309
|
0.188
|
— | — |
0.484
|
— |
0.668
|
— | — | — | — | — |
No JSON data available for plots.