Hg_chrom7_TN10mRNA_13592
Organism: Heterodera glycines Gene Locus: chr7:3202422-3205952 Feature type: polypeptideProtein Sequence
Length: 610
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 1.525 | 1.192 | 0.113 | 1.831 | 1.723 | 0.41 | 1.148 | 1.02 | 1.108 | 0.919 | 1.061 | 0.592 | 0.315 | 1.94 | 1.148 | 0.833 | 0.944 | 0.757 | 0.386 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12816
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RGVKRRR,RRSHSNQIEEIRRKRQV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.833
|
0.160
|
0.036
|
0.526
|
0.031
|
0.047
|
0.049
|
0.018
|
0.116
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004533
|
2.000
|
1.000
|
Hsc_gene_2070.t1
|
Hsc_gene_2035.t1;Hsc_gene_2035.t2;Hsc_gene_2070.t1
|
— |
Q21443.2 Lamin-1 [Caenorhabditis elegans]
|
KAI1731097.1 intermediate filament protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.920|GO:0110165_0.914|GO:0005622_0.887|GO:0043226_0.820|GO:0008150_0.804|GO:0043229_0.797|GO:0016020_0.758|GO:0009987_0.755|GO:0003674_0.702|GO:0043227_0.665|GO:0005737_0.618|GO:0071840_0.603|GO:0043231_0.600|GO:0016043_0.593|GO:0043228_0.591|GO:0043232_0.591|GO:0005634_0.572|GO:0006996_0.541|GO:0071944_0.513
|
IPR001322+472-595_481-581+|IPR036415+443-585_443-591+|IPR039008+48-404_49-405+
|
SM01391+48-404+
|
PF00038+48-404+Intermediate_filament_protein|PF00932+481-581+Lamin_Tail_Domain
|
— |
PTHR45721+26-587+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-63;134-325;394-498;609-610
|
3.000
|
64-133;326-393;499-608
|
3ssu_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.532
|
70229.920
|
5.971
|
-5.000
|
35.410
|
6.721
|
61.803
|
38.197
|
17.869
|
17.541
|
45.410
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
tan
|
2257.441
|
2177.577
|
2558.758
|
2691.477
|
3297.002
|
3177.535
|
2183.523
|
1813.214
|
2635.493
|
1187.528
|
1808.085
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.168
|
0.181
|
0.261
|
— |
-0.531
|
-0.910
|
0.409
|
— | — |
1.678
|
— | — |
No JSON data available for plots.