Hg_chrom7_TN10mRNA_13593
Organism: Heterodera glycines Gene Locus: chr7:3215853-3217668 Feature type: polypeptideProtein Sequence
Length: 451
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.541 | 1.65 | 1.088 | 0.994 | 1.183 | 1.251 | 0.475 | 1.441 | 1.429 | 1.109 | 1.142 | 1.304 | 1.355 | 0.64 | 0.86 | 1.33 | 0.727 | 0.84 | 1.876 | 0.587 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12817
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
SSRKR,RKNVIPRMAENLRQKIKDK
|
— | — |
8-48
|
0.868
|
— | — |
0.000
|
— | — |
0.652
|
0.205
|
0.019
|
0.386
|
0.285
|
0.103
|
0.235
|
0.059
|
0.078
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001646
|
3.000
|
1.000
|
Hsc_gene_8976.t1
|
— | — | — |
KAF7635668.1 Dimer_Tnp_hAT domain-containing protein [Meloidogyne graminicola]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677
|
— |
IPR003656+3-55_6-48+|IPR012337+137-406+|IPR036236+6-55+|IPR052717+4-240+
|
SM00614+3-51+
|
PF02892+6-48+BED_zinc_finger
|
— |
PTHR46169+4-240+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-451
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.661
|
51845.720
|
6.556
|
0.500
|
27.716
|
12.195
|
53.437
|
46.563
|
14.634
|
13.082
|
47.228
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
magenta
|
125.363
|
124.018
|
164.079
|
163.968
|
156.738
|
170.141
|
56.399
|
158.120
|
2.764
|
173.840
|
100.522
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.267
|
— | — | — |
-1.589
|
— |
-1.351
|
-6.146
|
6.193
|
— | — | — |
No JSON data available for plots.