Hg_chrom7_TN10mRNA_13594
Organism: Heterodera glycines Gene Locus: chr7:3220873-3226924 Feature type: polypeptideProtein Sequence
Length: 1,026
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.133 | 1.383 | 0.638 | 0.202 | 1.072 | 1.874 | 1.845 | 0.536 | 0.585 | 0.711 | 0.502 | 2.179 | 1.164 | 1.218 | 1.014 | 0.891 | 1.055 | 0.679 | 0.6 | 0.459 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12818
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
LGEV,RRRESNSRRRRKKKKRKEG,KNKGEEMGRKRRRESNSRRRRKKKKRKE
|
— | — | — | — | — | — |
0.001
|
— | — |
0.321
|
0.089
|
0.040
|
0.407
|
0.069
|
0.016
|
0.082
|
0.037
|
0.180
|
0.758
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000857
|
2.000
|
4.000
|
Hsc_gene_2068.t1;Hsc_gene_2068.t2;Hsc_gene_2068.t3;Hsc_gene_2068.t4
|
Hsc_gene_2065.t1;Hsc_gene_2067.t2
|
— | — |
KAF7635056.1 Glutaredoxin domain-containing protein, partial [Meloidogyne graminicola]
|
No
|
0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-865;957-1026
|
1.000
|
866-956
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
107581.930
|
5.204
|
-11.500
|
19.298
|
7.602
|
45.224
|
54.776
|
9.357
|
9.942
|
58.772
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
turquoise
|
89.676
|
73.026
|
60.894
|
49.235
|
55.445
|
75.787
|
202.485
|
31.364
|
53.852
|
146.355
|
106.711
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.495
|
-0.706
|
— | — |
0.464
|
1.429
|
-1.382
|
2.836
|
— | — | — | — | — |
No JSON data available for plots.