Hg_chrom7_TN10mRNA_13600
Organism: Heterodera glycines Gene Locus: chr7:3271722-3288029 Feature type: polypeptideProtein Sequence
Length: 2,390
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.017 | 1.109 | 1.225 | 0.274 | 1.011 | 1.363 | 0.782 | 1.485 | 0.762 | 1.165 | 0.685 | 0.837 | 1.325 | 1.118 | 1.264 | 1.136 | 1.104 | 0.945 | 0.644 | 0.443 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12824
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
KKKR,KRLLMNAEDAKVKRI,KKAVPKEQQGQLWHNHRKK,KSRPPATGKKVPSSKAKKGE
|
— | — | — | — | — | — |
0.001
|
— | — |
0.239
|
0.088
|
0.022
|
0.231
|
0.568
|
0.209
|
0.491
|
0.020
|
0.380
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011004
|
1.000
|
1.000
|
Hsc_gene_2063.t1
|
Hsc_gene_2063.t1
|
— |
Q92545.3 Transmembrane protein 131 [Homo sapiens]
|
KAH7731417.1 Protein C27F2.8 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.969|GO:0005575_0.931|GO:0110165_0.923|GO:0016020_0.865|GO:0005622_0.843|GO:0071944_0.835|GO:0005886_0.816|GO:0043226_0.737|GO:0005737_0.734|GO:0008152_0.723|GO:0043229_0.718|GO:0009058_0.692|GO:0043227_0.675|GO:0043231_0.660|GO:0032963_0.595|GO:0032964_0.595|GO:0005773_0.567|GO:0012505_0.546
|
IPR022113+195-271+|IPR039877+476-2014+|IPR045695+1057-1452+
|
— |
PF12371+195-271+Transmembrane_protein_131-like_N-terminal|PF19532+1057-1452+Transmembrane_protein_131-like
|
— |
PTHR22050+476-2014+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
389-480;534-664;1561-2390
|
3.000
|
1-388;481-533;665-1560
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.658
|
263537.230
|
6.178
|
-14.500
|
26.485
|
10.084
|
51.255
|
48.745
|
13.682
|
12.803
|
54.351
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
5958.443
|
7092.332
|
4973.741
|
3407.928
|
5233.336
|
7969.486
|
3231.715
|
4531.362
|
9422.631
|
5336.252
|
7087.557
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.741
|
-1.194
|
-0.437
|
0.587
|
0.622
|
-1.293
|
-0.926
|
— | — | — | — | — | — |
No JSON data available for plots.