Hg_chrom7_TN10mRNA_13601
Organism: Heterodera glycines Gene Locus: chr7:3288240-3289971 Feature type: polypeptideProtein Sequence
Length: 192
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.424 | 1.09 | 1.326 | 0.898 | 1.302 | 0.401 | 0.806 | 1.042 | 1.157 | 1.267 | 1.342 | 0.919 | 1.447 | 0.601 | 1.701 | 0.67 | 0.854 | 1.026 | 0.401 | 1.379 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12825
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.722
|
0.230
|
0.024
|
0.460
|
0.051
|
0.013
|
0.027
|
0.008
|
0.089
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011005
|
1.000
|
1.000
|
Hsc_gene_2062.t1
|
Hsc_gene_2062.t1
|
— |
Q22795.2 Histone-lysine N-methyltransferase set-1 [Caenorhabditis elegans]
|
KAI1721150.1 SET domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.877|GO:0005575_0.829|GO:0110165_0.815|GO:0005622_0.780|GO:0009987_0.723|GO:0043226_0.712|GO:0043229_0.696|GO:0016020_0.675|GO:0003674_0.654|GO:0043227_0.623|GO:0043231_0.623|GO:0065007_0.621|GO:0050789_0.612|GO:0008152_0.582|GO:0044237_0.563|GO:0050794_0.557|GO:0009058_0.553|GO:0043170_0.546|GO:0044249_0.537|GO:0009059_0.526|GO:0071840_0.517|GO:0003824_0.516|GO:0005634_0.516|GO:0010467_0.515|GO:0016043_0.508|GO:0019222_0.502
|
IPR001214+53-176_53-182_64-176+|IPR046341+2-192_54-181+|IPR047266+38-178+|IPR051760+17-189+
|
SM00317+53-182+
|
PF00856+64-176+SET_domain
|
— |
PTHR46167+17-189+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1
|
1.000
|
2-192
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
22313.540
|
8.583
|
6.000
|
34.375
|
12.500
|
50.521
|
49.479
|
19.271
|
15.104
|
44.792
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
2927.276
|
465.707
|
475.641
|
572.637
|
770.013
|
610.170
|
835.565
|
600.016
|
143.374
|
11075.647
|
6390.387
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.201
|
0.161
|
0.378
|
0.395
|
-0.321
|
0.465
|
— |
0.622
|
-6.384
|
— | — | — | — |
No JSON data available for plots.