Hg_chrom7_TN10mRNA_13602
Organism: Heterodera glycines Gene Locus: chr7:3291215-3295191 Feature type: polypeptideProtein Sequence
Length: 591
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.728 | 0.669 | 1.015 | 0.525 | 1.156 | 1.649 | 0.725 | 1.269 | 1.241 | 1.509 | 0.692 | 1.294 | 0.94 | 1.041 | 1.658 | 0.87 | 1.276 | 0.718 | 1.041 | 0.398 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12826
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— |
RKKRKPRFAKYGKV
|
18-38
|
0.937
|
— | — | — | — |
0.000
|
— | — |
0.163
|
0.508
|
0.042
|
0.393
|
0.424
|
0.302
|
0.395
|
0.058
|
0.235
|
0.244
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000299
|
9.000
|
0.000
|
0.000
|
— | — |
Q1AV13.1 ATP-dependent zinc metalloprotease FtsH [Rubrobacter xylanophilus DSM 9941]
|
KAH7722313.1 vacuolar protein sorting-associated protein 13C-like protein [Aphelenchus avenae]
|
No
|
-0.070
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004176|GO:0004222|GO:0005524|GO:0006508
|
GO:0008150_0.949|GO:0005575_0.901|GO:0009987_0.899|GO:0110165_0.891|GO:0005622_0.828|GO:0016020_0.812|GO:0008152_0.783|GO:0044238_0.769|GO:0044237_0.759|GO:0071944_0.758|GO:0005737_0.754|GO:0043170_0.754|GO:0005886_0.745|GO:0019538_0.727|GO:0009056_0.698|GO:0009057_0.690|GO:0030163_0.682|GO:0043226_0.511
|
IPR000642+45-132+|IPR037219+41-192_43-195+
|
— |
PF01434+45-132+Peptidase_family_M41
|
— |
PTHR23076+45-194+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
181-246;525-591
|
2.000
|
1-180;247-524
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.648
|
66861.280
|
7.701
|
8.500
|
27.750
|
8.629
|
50.931
|
49.069
|
15.228
|
12.521
|
46.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1443.647
|
1421.309
|
1186.178
|
1011.399
|
1179.713
|
973.006
|
1226.524
|
1516.145
|
1786.508
|
1783.220
|
1784.629
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.491
|
-0.628
|
-0.121
|
0.190
|
-0.264
|
0.346
|
0.534
|
— | — | — | — | — | — |
No JSON data available for plots.