SCN Proteipedia

Hg_chrom7_TN10mRNA_13604

Organism: Heterodera glycines Gene Locus: chr7:3299235-3307938 Feature type: polypeptide

Protein Sequence

Length: 1,383

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.026	0.908	1.183	0.623	1.157	1.149	1.067	1.048	1.044	1.094	0.8	1.531	1.125	0.584	1.535	1.054	0.842	0.876	0.667	0.595	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12828	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRRR,RRKRKREAAAKRKRQQR,KQRRLQRRKRKREAAAKRKRQ	—	—	—	—	—	—	0.000	—	—	0.808	0.177	0.021	0.175	0.030	0.089	0.053	0.054	0.092	0.137

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011007	1.000	1.000	Hsc_gene_2037.t1	Hsc_gene_2037.t1	—	O01737.3 Protein strawberry notch homolog [Caenorhabditis elegans]	KAI1721149.1 p-loop containing NTP hydrolase pore-1 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006355	GO:0008150_0.961\|GO:0009987_0.909\|GO:0065007_0.836\|GO:0050789_0.813\|GO:0050794_0.788\|GO:0050896_0.783\|GO:0005575_0.719\|GO:0110165_0.716\|GO:0048583_0.697\|GO:0032501_0.673\|GO:0005622_0.632\|GO:0051716_0.625\|GO:0016020_0.619\|GO:0008152_0.613\|GO:0048518_0.604\|GO:0048522_0.599\|GO:0044237_0.594\|GO:0009058_0.585\|GO:0043170_0.585\|GO:0043226_0.572\|GO:0044249_0.572\|GO:0009059_0.562\|GO:0010467_0.555\|GO:0043229_0.552\|GO:0019222_0.548\|GO:0031323_0.547\|GO:0032502_0.544\|GO:0048856_0.544\|GO:0060255_0.539\|GO:0009889_0.530\|GO:0031326_0.530\|GO:0010468_0.528\|GO:0010556_0.528\|GO:0043227_0.522	IPR026741+38-1359+\|IPR026937+837-1116+\|IPR027417+120-362_122-351_893-999+\|IPR039187+88-420+	—	PF13871+837-1116+C-terminal_domain_on_Strawberry_notch_homologue\|PF13872+88-420+P-loop_containing_NTP_hydrolase_pore-1	—	PTHR12706+38-1359+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-81;541-785;1368-1383	2.000	82-540;786-1367	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.690	152646.080	6.818	5.500	28.344	9.038	49.241	50.759	14.895	13.449	51.338

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	2493.464	6542.067	2184.167	3250.564	3296.819	2421.407	2990.245	1433.491	1822.122	1247.778	1493.925

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.812	-1.146	0.682	—	-0.431	0.314	-0.854	1.199	—	—	—	—	—

No JSON data available for plots.

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