Hg_chrom7_TN10mRNA_13605
Organism: Heterodera glycines Gene Locus: chr7:3308259-3314590 Feature type: polypeptideProtein Sequence
Length: 417
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.669 | 0.892 | 0.654 | 0.496 | 0.839 | 0.615 | 1.085 | 2.278 | 0.853 | 1.588 | 0.69 | 2.257 | 1.865 | 0.968 | 1.566 | 0.925 | 0.708 | 0.981 | 1.476 | 0.494 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12829
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
GGPRVESKGKHGGIGR
|
7-57
|
0.987
|
19-67
|
0.956
|
— | — |
0.000
|
— | — |
0.058
|
0.087
|
0.074
|
0.163
|
0.524
|
0.158
|
0.317
|
0.018
|
0.158
|
0.633
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004535
|
1.000
|
2.000
|
Hsc_gene_2038.t1;Hsc_gene_2038.t2
|
Hsc_gene_2038.t1;Hsc_gene_2038.t2;Hsc_gene_2040.t1
|
— |
P34317.2 Putative UDP-glucuronosyltransferase ugt-60 [Caenorhabditis elegans]
|
KAI3410069.1 putative UDP-glucuronosyltransferase ugt-60 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008194
|
GO:0008150_0.822|GO:0003674_0.719|GO:0009987_0.679|GO:0005575_0.651|GO:0110165_0.651|GO:0003824_0.613|GO:0016020_0.562|GO:0005622_0.550|GO:0016740_0.549|GO:0008152_0.540|GO:0005737_0.513|GO:0043226_0.510|GO:0016757_0.503
|
IPR002213+109-356+|IPR050271+87-356+
|
— |
PF00201+109-356+UDP-glucoronosyl_and_UDP-glucosyl_transferase
|
— |
PTHR48043+87-356+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
354-417
|
1.000
|
1-353
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.875
|
47188.780
|
10.221
|
24.500
|
25.420
|
14.868
|
42.446
|
57.554
|
16.787
|
8.633
|
46.043
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
644.197
|
2259.959
|
1189.699
|
222.701
|
201.179
|
135.736
|
918.330
|
324.084
|
82.051
|
787.442
|
485.132
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.157
|
-3.480
|
-2.307
|
— |
-0.556
|
2.770
|
1.152
|
1.645
|
-3.389
|
— | — | — | — |
No JSON data available for plots.