Hg_chrom7_TN10mRNA_13607
Organism: Heterodera glycines Gene Locus: chr7:3315159-3317217 Feature type: polypeptideProtein Sequence
Length: 273
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.022 | 1.107 | 0.533 | 0.379 | 1.832 | 1.221 | 0.916 | 0.916 | 1.14 | 1.089 | 1.388 | 1.077 | 1.425 | 0.775 | 0.822 | 1.308 | 0.781 | 0.666 | 0.0 | 0.431 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12831
|
— | — |
0.556
|
— |
1.000
|
1.000
|
— |
1.000
|
— |
1.000
|
— |
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.904
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.707
|
0.188
|
0.009
|
0.496
|
0.042
|
0.022
|
0.062
|
0.002
|
0.032
|
0.152
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002400
|
2.000
|
2.000
|
Hsc_gene_2043.t1;Hsc_gene_2045.t1
|
— | — | — |
XP_008567788.1 PREDICTED: transcription factor AP-2 gamma isoform X2 [Galeopterus variegatus]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
GO:0003700|GO:0005634|GO:0006355
|
GO:0008150_0.872|GO:0009987_0.819|GO:0005575_0.753|GO:0110165_0.751|GO:0065007_0.714|GO:0050789_0.703|GO:0005622_0.698|GO:0050794_0.679|GO:0003674_0.678|GO:0043226_0.651|GO:0008152_0.647|GO:0005488_0.639|GO:0043170_0.639|GO:0044237_0.639|GO:0044238_0.635|GO:0043229_0.634|GO:0009058_0.633|GO:0009059_0.621|GO:0044249_0.621|GO:0048518_0.621|GO:0010467_0.616|GO:0019222_0.616|GO:0031323_0.615|GO:0006139_0.611|GO:0048522_0.610|GO:0060255_0.608|GO:0080090_0.606|GO:0034654_0.602|GO:0090304_0.598|GO:0009889_0.597|GO:0031326_0.597|GO:0010556_0.595|GO:0141187_0.593|GO:0010468_0.592|GO:0016070_0.592|GO:0032774_0.590|GO:0009893_0.588|GO:0010604_0.585|GO:0031325_0.582|GO:0016020_0.581|GO:0019219_0.581|GO:0009891_0.580|GO:0031328_0.580|GO:0006351_0.578|GO:0051252_0.578|GO:0010557_0.577|GO:0032501_0.576|GO:0006355_0.574|GO:2001141_0.574|GO:0045935_0.570|GO:0006366_0.568|GO:0032502_0.568|GO:0051254_0.568|GO:0045893_0.566|GO:1902680_0.566|GO:0006357_0.565|GO:0045944_0.561|GO:0097159_0.547|GO:0003676_0.530|GO:0048856_0.518|GO:0003677_0.506|GO:0043565_0.505|GO:0003690_0.504|GO:0043227_0.504|GO:1990837_0.504
|
IPR004979+35-262+|IPR013854+53-256+
|
— |
PF03299+53-256+Transcription_factor_AP-2
|
— |
PTHR10812+35-262+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;259-273
|
1.000
|
65-258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.758
|
29974.830
|
6.651
|
0.500
|
28.938
|
8.425
|
52.381
|
47.619
|
15.018
|
13.919
|
47.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
122.899
|
309.348
|
117.566
|
137.160
|
149.955
|
180.270
|
139.685
|
245.444
|
12.658
|
48.405
|
33.085
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.625
|
-1.310
|
0.331
|
— |
0.281
|
-0.358
|
— |
-0.672
|
— | — | — | — | — |
No JSON data available for plots.