Hg_chrom7_TN10mRNA_13612
Organism: Heterodera glycines Gene Locus: chr7:3349911-3352430 Feature type: polypeptideProtein Sequence
Length: 295
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.025 | 0.867 | 0.74 | 0.468 | 1.186 | 1.217 | 0.565 | 2.203 | 0.904 | 1.649 | 0.719 | 1.595 | 1.13 | 0.391 | 1.799 | 1.114 | 0.611 | 1.233 | 0.782 | 0.499 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12835
|
— | — |
2.667
|
5.000
|
1.000
|
1.000
|
4.000
|
1.000
|
4.000
|
2.000
|
5.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
golgi_apparatus
|
— |
RRRR
|
67-87
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.088
|
0.168
|
0.050
|
0.286
|
0.329
|
0.424
|
0.558
|
0.025
|
0.265
|
0.249
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000910
|
1.000
|
5.000
|
Hsc_gene_26662.t1;Hsc_gene_26662.t2;Hsc_gene_26664.t1;Hsc_gene_26667.t1;Hsc_gene_6031.t1
|
— | — |
P15924.3 Desmoplakin [Homo sapiens]
|
KAF7636205.1 Calponin-homology [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0045104
|
GO:0005575_0.872|GO:0110165_0.872|GO:0008150_0.832|GO:0009987_0.739|GO:0016020_0.680|GO:0005622_0.670|GO:0003674_0.597|GO:0005737_0.582|GO:0043226_0.579|GO:0043229_0.576|GO:0071944_0.571|GO:0005886_0.566|GO:0071840_0.543|GO:0005488_0.541|GO:0016043_0.540|GO:0032501_0.530|GO:0005515_0.510|GO:0032502_0.505|GO:0048856_0.505
|
IPR043197+109-236+
|
— | — | — |
PTHR23169+109-236+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-295
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.716
|
33555.620
|
9.652
|
13.500
|
29.153
|
11.186
|
49.153
|
50.847
|
17.966
|
11.186
|
44.407
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkmagenta
|
1105.983
|
23.868
|
21.853
|
19.246
|
21.115
|
16.087
|
7.197
|
5.230
|
362.029
|
4524.178
|
2740.400
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
-1.150
|
-1.727
|
— |
-2.364
|
-4.086
|
-7.212
|
— | — |
No JSON data available for plots.