Hg_chrom7_TN10mRNA_13615
Organism: Heterodera glycines Gene Locus: chr7:3375193-3376181 Feature type: polypeptideProtein Sequence
Length: 205
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.021 | 0.908 | 0.976 | 1.177 | 0.894 | 1.376 | 0.987 | 1.707 | 1.084 | 0.923 | 0.665 | 2.009 | 1.22 | 0.938 | 0.398 | 1.812 | 0.72 | 0.961 | 0.375 | 0.43 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12838
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — |
Hsc_gene_11801;Hsc_gene_6070;Hsc_gene_6074;Hsc_gene_6068
|
— | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — |
1-19
|
0.999
|
1.000
|
0.000
|
0.000
|
0.781
|
0.211
|
0.012
|
0.411
|
0.068
|
0.161
|
0.070
|
0.045
|
0.079
|
0.159
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000088
|
11.000
|
5.000
|
Hsc_gene_11801.t1;Hsc_gene_19009.t4;Hsc_gene_24840.t1;Hsc_gene_24862.t1;Hsc_gene_24862.t2
|
Hsc_gene_11801.t1;Hsc_gene_6068.t1;Hsc_gene_6070.t1
|
— | — |
AJR19774.1 esophageal gland-localized secretory protein 6 [Heterodera glycines]
|
WP_346314421
|
0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-205
|
1.000
|
1-148
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.667
|
21804.480
|
4.971
|
-5.500
|
20.488
|
9.756
|
46.829
|
53.171
|
9.756
|
10.732
|
58.049
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
pink
|
631.949
|
0.074
|
0.143
|
5.604
|
23.265
|
4.227
|
44.209
|
2.067
|
29.024
|
2713.161
|
1562.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
5.952
|
5.380
|
2.018
|
-2.442
|
3.392
|
— |
4.563
|
-6.653
|
— |
-6.743
|
— | — |