Hg_chrom7_TN10mRNA_13618
Organism: Heterodera glycines Gene Locus: chr7:3442700-3449223 Feature type: polypeptideProtein Sequence
Length: 543
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.814 | 0.985 | 0.737 | 0.445 | 0.645 | 1.181 | 0.745 | 1.473 | 1.187 | 1.618 | 0.363 | 1.625 | 2.302 | 1.31 | 1.203 | 1.263 | 0.634 | 1.088 | 0.85 | 0.379 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12841
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular|lysosome_vacuole
|
— | — |
15-48
|
0.906
|
64-92
|
0.967
|
— | — |
0.001
|
— | — |
0.166
|
0.055
|
0.231
|
0.230
|
0.288
|
0.597
|
0.181
|
0.006
|
0.329
|
0.711
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004536
|
2.000
|
1.000
|
Hsc_gene_2030.t1
|
Hsc_gene_2030.t1;Hsc_gene_2032.t1
|
— |
Q10011.3 Uncharacterized protein T19C3.5 [Caenorhabditis elegans]
|
KAI1729442.1 bactericidal permeability-increasing protein [Ditylenchus destructor]
|
No
|
0.050
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008289
|
GO:0005575_0.900|GO:0110165_0.900|GO:0008150_0.728|GO:0005622_0.686|GO:0009987_0.668|GO:0003674_0.656|GO:0005737_0.641|GO:0008152_0.569|GO:0005488_0.541|GO:0044237_0.541|GO:0009058_0.538|GO:0016020_0.537|GO:0044249_0.515
|
IPR001124+284-511_296-509+|IPR017942+43-271_48-223+|IPR017943+37-253_282-511+|IPR032942+19-516+
|
SM00328+43-271+|SM00329+296-509+
|
PF01273+48-223+LBP_/_BPI_/_CETP_family,_N-terminal_domain|PF02886+284-511+LBP_/_BPI_/_CETP_family,_C-terminal_domain
|
— |
PTHR10504+19-516+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-543
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.827
|
60560.080
|
7.995
|
10.000
|
19.153
|
13.628
|
40.700
|
59.300
|
11.234
|
7.919
|
49.540
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
180.059
|
263.784
|
114.687
|
45.978
|
47.693
|
49.206
|
100.546
|
227.147
|
3.278
|
466.911
|
268.211
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.430
|
-2.657
|
-1.211
|
— | — |
1.040
|
2.096
|
-1.033
|
-7.318
|
4.128
|
— | — | — |
No JSON data available for plots.