Hg_chrom7_TN10mRNA_13619
Organism: Heterodera glycines Gene Locus: chr7:3450663-3455615 Feature type: polypeptideProtein Sequence
Length: 424
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.795 | 1.207 | 0.943 | 0.407 | 0.786 | 1.27 | 0.927 | 1.297 | 0.891 | 0.892 | 0.679 | 1.11 | 1.179 | 1.089 | 2.118 | 0.977 | 0.851 | 1.072 | 1.451 | 0.971 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12842
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRFPWTAAGGANGGWRRGR,GWRRGRRKTDRSEAATKEGRRRQRQRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.060
|
0.075
|
0.022
|
0.157
|
0.130
|
0.130
|
0.240
|
0.007
|
0.287
|
0.881
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001394
|
3.000
|
2.000
|
Hsc_gene_2029.t2;Hsc_gene_2029.t3
|
Hsc_gene_2029.t2;Hsc_gene_2029.t3
|
— |
P55112.4 Zinc metalloproteinase nas-4 [Caenorhabditis elegans]
|
KAI3410061.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.740|GO:0005575_0.639|GO:0110165_0.637|GO:0003674_0.598
|
IPR001506+156-351_164-350_186-204_240-258_259-276_298-313_336-349+|IPR006026+161-303+|IPR024079+100-353+|IPR034035+168-348+
|
SM00235+161-303+
|
PF01400+164-350+Astacin_(Peptidase_family_M12A)
|
G3DSA:3.40.390.10:FF:000015+93-353+Meprin_A_subunit
|
PTHR10127+117-372+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
102-146;346-424
|
2.000
|
1-101;147-345
|
3lqb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.841
|
48228.530
|
10.399
|
26.500
|
27.358
|
12.028
|
49.528
|
50.472
|
17.453
|
9.906
|
50.943
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
blue
|
247.202
|
8.693
|
1.728
|
1.060
|
7.811
|
17.264
|
6.188
|
8.823
|
7.856
|
1056.277
|
606.954
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.578
|
-3.173
|
— |
2.846
|
1.162
|
-1.469
|
-1.078
|
— |
-7.280
|
— |
-6.682
|
— | — |
No JSON data available for plots.