Hg_chrom7_TN10mRNA_13620
Organism: Heterodera glycines Gene Locus: chr7:3456991-3461776 Feature type: polypeptideProtein Sequence
Length: 500
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.721 | 0.791 | 1.164 | 0.621 | 1.6 | 0.974 | 1.0 | 1.3 | 0.889 | 1.432 | 1.03 | 2.0 | 1.167 | 0.5 | 1.714 | 0.657 | 0.623 | 0.667 | 1.231 | 1.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12843
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.072
|
0.924
|
0.019
|
0.095
|
0.034
|
0.027
|
0.037
|
0.002
|
0.118
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004537
|
2.000
|
1.000
|
Hsc_gene_2028.t1
|
Hsc_gene_2028.t1
|
— |
Q9D7K5.1 Distal membrane-arm assembly complex protein 2 [Mus musculus]
|
KHN78647.1 ATP synthase subunit s-like protein [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.909|GO:0110165_0.909|GO:0005622_0.844|GO:0016020_0.818|GO:0043226_0.783|GO:0005737_0.780|GO:0043229_0.773|GO:0043227_0.731|GO:0043231_0.710|GO:0005739_0.557|GO:0008150_0.511
|
IPR032675+116-287+
|
— | — |
G3DSA:3.80.10.10:FF:000168+116-287+Distal_membrane_arm_assembly_complex_2
|
— |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
430-500
|
1.000
|
1-429
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
57713.690
|
6.816
|
2.500
|
33.800
|
11.800
|
49.400
|
50.600
|
17.800
|
16.000
|
41.600
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
55.249
|
17.890
|
24.553
|
14.037
|
11.396
|
12.033
|
107.013
|
63.488
|
16.014
|
135.800
|
84.463
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.695
|
— | — |
3.165
|
2.293
|
0.898
|
-3.217
|
— |
-3.268
|
— | — |
No JSON data available for plots.