Hg_chrom7_TN10mRNA_13624
Organism: Heterodera glycines Gene Locus: chr7:3468800-3473610 Feature type: polypeptideProtein Sequence
Length: 387
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.901 | 0.961 | 1.222 | 1.426 | 0.775 | 1.325 | 1.046 | 1.809 | 0.919 | 0.698 | 0.509 | 1.52 | 0.79 | 0.894 | 1.951 | 0.997 | 0.847 | 0.822 | 1.193 | 1.064 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12846
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.814
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — |
30-69
|
0.867
|
— | — | — | — |
0.000
|
— | — |
0.219
|
0.217
|
0.068
|
0.197
|
0.057
|
0.054
|
0.104
|
0.054
|
0.206
|
0.891
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001394
|
3.000
|
2.000
|
Hsc_gene_2029.t2;Hsc_gene_2029.t3
|
Hsc_gene_2029.t1;Hsc_gene_2029.t2;Hsc_gene_2029.t3
|
— |
P55112.4 Zinc metalloproteinase nas-4 [Caenorhabditis elegans]
|
KAI1729142.1 astacin (Peptidase family m12A) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.751|GO:0003674_0.621|GO:0005575_0.612|GO:0110165_0.612|GO:0032501_0.513
|
IPR001506+33-228_41-227_63-81_117-135_136-153_175-190_213-226+|IPR006026+38-180+|IPR024079+7-230+|IPR034035+45-225+
|
SM00235+38-180+
|
PF01400+41-227+Astacin_(Peptidase_family_M12A)
|
G3DSA:3.40.390.10:FF:000015+7-230+Meprin_A_subunit
|
PTHR10127+29-320+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-9
|
1.000
|
10-387
|
3lqb_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.842
|
43419.650
|
8.189
|
13.000
|
27.907
|
11.628
|
49.354
|
50.646
|
16.537
|
11.370
|
53.747
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
19.033
|
22.359
|
3.436
|
3.200
|
18.119
|
25.497
|
12.360
|
13.075
|
0.000
|
46.503
|
26.573
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.944
|
-2.941
|
— |
2.471
|
— |
-1.036
|
-1.071
|
— |
-6.315
|
— | — | — | — |
No JSON data available for plots.