Hg_chrom7_TN10mRNA_13631
Organism: Heterodera glycines Gene Locus: chr7:3515409-3518413 Feature type: polypeptideProtein Sequence
Length: 319
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.51 | 0.729 | 0.855 | 1.621 | 0.575 | 0.643 | 0.597 | 1.254 | 1.115 | 2.033 | 0.285 | 1.66 | 2.09 | 1.025 | 1.599 | 0.851 | 0.874 | 1.377 | 1.929 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12853
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.934
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.376
|
0.197
|
0.011
|
0.469
|
0.293
|
0.172
|
0.124
|
0.026
|
0.176
|
0.202
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004539
|
3.000
|
0.000
|
0.000
|
— | — |
Q19087.1 Aspartyl aminopeptidase [Caenorhabditis elegans]
|
KAI1706850.1 aminopeptidase I zinc metalloprotease (M18) domain-containing protein [Ditylenchus destructor]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004177|GO:0006508|GO:0008270
|
GO:0008150_0.964|GO:0005575_0.908|GO:0110165_0.908|GO:0003674_0.863|GO:0005622_0.756|GO:0005737_0.731|GO:0003824_0.703|GO:0009987_0.686|GO:0016020_0.682|GO:0140096_0.673|GO:0016787_0.669|GO:0008233_0.665|GO:0008238_0.654|GO:0004177_0.650|GO:0008152_0.605|GO:0043226_0.544|GO:0043227_0.543|GO:0005488_0.541|GO:0043229_0.528|GO:0043231_0.528
|
IPR001948+31-122_31-124+|IPR023358+29-50+
|
— |
PF02127+31-124+Aminopeptidase_I_zinc_metalloprotease_(M18)
|
— |
PTHR28570+31-122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-319
|
3vat_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
36553.260
|
8.109
|
9.000
|
20.376
|
13.793
|
37.304
|
62.696
|
12.226
|
8.150
|
47.649
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
93.847
|
199.265
|
101.784
|
93.076
|
71.061
|
64.164
|
47.029
|
116.314
|
24.904
|
132.144
|
86.184
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.201
|
-1.235
|
— |
-0.418
|
— |
-0.439
|
0.756
|
-1.166
|
— | — | — | — | — |
No JSON data available for plots.