Hg_chrom7_TN10mRNA_13632
Organism: Heterodera glycines Gene Locus: chr7:3522380-3525289 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.919 | 1.119 | 1.0 | 0.948 | 0.63 | 1.322 | 0.573 | 0.859 | 1.222 | 1.207 | 0.781 | 1.213 | 1.145 | 1.19 | 1.192 | 1.669 | 1.014 | 0.833 | 1.057 | 0.303 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12854
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KRVPNFHRVRSKDKRV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.704
|
0.405
|
0.034
|
0.186
|
0.104
|
0.110
|
0.114
|
0.172
|
0.241
|
0.036
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004539
|
3.000
|
0.000
|
0.000
|
Hsc_gene_1966.t1;Hsc_gene_1966.t2;Hsc_gene_1966.t4
|
— |
Q19087.1 Aspartyl aminopeptidase [Caenorhabditis elegans]
|
KAI3410113.1 von Willebrand factor type A domain [Globodera pallida]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004177|GO:0006508|GO:0008270
|
GO:0008150_0.873|GO:0005575_0.867|GO:0110165_0.863|GO:0005622_0.789|GO:0005737_0.691|GO:0003674_0.674|GO:0009987_0.628|GO:0016020_0.565|GO:0003824_0.545|GO:0140096_0.541|GO:0016787_0.538|GO:0043226_0.531|GO:0008233_0.527|GO:0004177_0.518|GO:0008238_0.518|GO:0043229_0.506
|
IPR001948+4-101+|IPR023358+5-23+
|
— |
PF02127+4-101+Aminopeptidase_I_zinc_metalloprotease_(M18)
|
— |
PTHR28570+4-101+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-291
|
7u5h_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.906
|
31976.390
|
8.498
|
7.500
|
21.993
|
8.247
|
49.828
|
50.172
|
12.715
|
9.278
|
55.326
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
407.249
|
1193.175
|
521.327
|
547.937
|
520.480
|
476.256
|
278.449
|
508.711
|
250.641
|
76.358
|
151.050
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.423
|
-1.260
|
0.180
|
— | — |
-0.765
|
— |
-0.729
|
— | — | — | — | — |
No JSON data available for plots.