Hg_chrom7_TN10mRNA_13636
Organism: Heterodera glycines Gene Locus: chr7:3558190-3568058 Feature type: polypeptideProtein Sequence
Length: 1,692
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.292 | 1.127 | 0.838 | 0.795 | 0.768 | 1.258 | 0.844 | 1.064 | 0.683 | 1.022 | 0.564 | 0.8 | 0.788 | 1.273 | 0.796 | 2.119 | 1.453 | 0.618 | 0.273 | 0.348 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12858
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
RRRR,LKKKWRKKKKNKSASGGAKKSGKNK
|
— | — |
7-31
|
0.995
|
— | — |
0.000
|
— | — |
0.094
|
0.092
|
0.020
|
0.330
|
0.102
|
0.090
|
0.203
|
0.038
|
0.371
|
0.901
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004540
|
1.000
|
2.000
|
Hsc_gene_2007.t1;Hsc_gene_2007.t2
|
— | — | — |
KAI1710173.1 PAN domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003609+15-92_37-77_532-656_899-983_903-970_903-984_1065-1151_1069-1152_1606-1681+|IPR040163+374-1586+
|
SM00473+15-92_532-656_899-983_1065-1151_1606-1681+
|
PF00024+37-77_903-970_1069-1152+PAN_domain
|
— |
PTHR23005+374-1586+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
195-473;580-888;1179-1609
|
4.000
|
1-194;474-579;889-1178;1610-1692
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.898
|
176180.180
|
6.091
|
-9.000
|
18.972
|
6.501
|
52.423
|
47.577
|
9.752
|
9.220
|
64.362
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
988.930
|
1338.713
|
1016.048
|
696.347
|
1061.531
|
1400.820
|
744.298
|
943.973
|
860.088
|
980.856
|
929.098
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.627
|
-1.080
|
-0.437
|
0.576
|
0.416
|
-0.903
|
-0.678
|
— | — | — | — | — | — |
No JSON data available for plots.