Hg_chrom7_TN10mRNA_13638
Organism: Heterodera glycines Gene Locus: chr7:3577506-3578062 Feature type: polypeptideProtein Sequence
Length: 120
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.581 | 1.357 | 1.212 | 0.862 | 3.194 | 1.068 | 0.298 | 2.083 | 1.111 | 0.676 | 1.641 | 0.98 | 1.157 | 0.641 | 0.17 | 0.714 | 0.82 | 0.758 | 1.282 | 0.735 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12860
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
0.996
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.679
|
0.062
|
0.013
|
0.668
|
0.316
|
0.222
|
0.288
|
0.159
|
0.110
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011013
|
1.000
|
1.000
|
Hsc_gene_2014.t1
|
Hsc_gene_2014.t1
|
— |
Q95Y72.2 Probable 26S proteasome complex subunit dss-1 [Caenorhabditis elegans]
|
ETN79864.1 DSS1/SEM1 family protein [Necator americanus]
|
No
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006406|GO:0008541|GO:0043248
|
GO:0005575_0.818|GO:0110165_0.813|GO:0005622_0.788|GO:0005737_0.736|GO:0043226_0.712|GO:0043229_0.694|GO:0016020_0.684|GO:0043227_0.659|GO:0043231_0.636|GO:0008150_0.611|GO:0005634_0.577|GO:0009987_0.554
|
IPR007834+16-85_18-81_24-81+
|
SM01385+18-81+
|
PF05160+24-81+DSS1/SEM1_family
|
— |
PTHR16771+16-85+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-47;112-120
|
1.000
|
48-111
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.960
|
14093.460
|
4.259
|
-14.500
|
41.667
|
12.500
|
61.667
|
38.333
|
15.833
|
25.833
|
40.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
yellow
|
2615.507
|
2353.837
|
2576.458
|
3033.712
|
2905.316
|
2681.535
|
1817.363
|
2779.467
|
3506.321
|
2007.719
|
2649.977
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.229
|
0.344
|
-0.095
|
— |
-0.549
|
— |
-0.468
|
— | — | — | — | — |
No JSON data available for plots.