Hg_chrom7_TN10mRNA_13641
Organism: Heterodera glycines Gene Locus: chr7:3587034-3590492 Feature type: polypeptideProtein Sequence
Length: 536
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.063 | 0.868 | 1.255 | 0.772 | 1.337 | 1.674 | 0.555 | 0.933 | 1.036 | 1.21 | 0.65 | 0.878 | 1.192 | 0.969 | 1.218 | 1.439 | 0.887 | 0.565 | 0.287 | 0.768 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12863
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.241
|
0.199
|
0.009
|
0.715
|
0.169
|
0.478
|
0.289
|
0.021
|
0.316
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011016
|
1.000
|
1.000
|
Hsc_gene_2017.t1
|
Hsc_gene_2017.t1
|
— |
Q9JM13.1 Rab5 GDP/GTP exchange factor [Mus musculus]
|
KAI3410054.1 VPS9 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0005085|GO:0008270|GO:0016192
|
GO:0008150_0.924|GO:0005575_0.904|GO:0110165_0.902|GO:0009987_0.879|GO:0005622_0.787|GO:0003674_0.765|GO:0016020_0.741|GO:0071944_0.671|GO:0051179_0.664|GO:0005886_0.647|GO:0051234_0.646|GO:0005488_0.632|GO:0043226_0.614|GO:0005515_0.603|GO:0065007_0.579|GO:0050789_0.568|GO:0050794_0.557|GO:0043227_0.553|GO:0051641_0.549|GO:0005737_0.530|GO:0006810_0.510
|
IPR002653+16-50_19-43_20-43+|IPR003123+246-390_281-398_283-385+|IPR037191+147-401_242-408+|IPR045046+7-433+
|
SM00167+281-398+|SM00259+19-43+
|
PF01754+20-43+A20-like_zinc_finger|PF02204+283-385+Vacuolar_sorting_protein_9_(VPS9)_domain
|
— |
PTHR23101+7-433+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
395-536
|
1.000
|
1-394
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
59650.350
|
4.649
|
-20.000
|
27.052
|
9.142
|
52.799
|
47.201
|
12.127
|
14.925
|
50.933
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
983.248
|
1312.731
|
1089.957
|
1322.657
|
1195.640
|
981.650
|
1188.723
|
892.294
|
998.926
|
558.645
|
747.337
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.497
|
-0.126
|
0.387
|
-0.178
|
-0.270
|
0.287
|
-0.244
|
0.557
|
— | — | — | — | — |
No JSON data available for plots.