SCN Proteipedia

Hg_chrom7_TN10mRNA_13643

Organism: Heterodera glycines Gene Locus: chr7:3593729-3597088 Feature type: polypeptide

Protein Sequence

Length: 514

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.018	1.176	1.238	0.604	1.102	1.347	0.787	1.362	1.383	1.131	0.825	0.687	0.919	0.748	0.874	1.167	0.861	1.15	0.898	0.458	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12865	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_Clustered	0.735

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.642	0.142	0.002	0.667	0.115	0.178	0.173	0.006	0.061	0.009

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011018	1.000	1.000	Hsc_gene_2019.t1	Hsc_gene_2019.t1;Hsc_gene_2020.t1	—	Q10051.2 Pre-mRNA-processing factor 19 [Caenorhabditis elegans]	KAI1721419.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000398\|GO:0000974\|GO:0004842\|GO:0005515\|GO:0006281\|GO:0016567\|GO:0061630	GO:0008150_0.907\|GO:0005575_0.843\|GO:0110165_0.841\|GO:0005622_0.782\|GO:0016020_0.721\|GO:0043226_0.703\|GO:0043229_0.686\|GO:0043227_0.652\|GO:0009987_0.643\|GO:0043231_0.626\|GO:0008152_0.541\|GO:0065007_0.541\|GO:0050789_0.534\|GO:0005634_0.518\|GO:0050794_0.513\|GO:0044238_0.510	IPR001680+205-252_255-294_259-294_262-303_297-336_307-334_339-381_356-381_361-390_384-423_388-423_391-432_428-465_468-507_471-505_475-505+\|IPR003613+3-85+\|IPR013083+4-61+\|IPR013915+71-136+\|IPR015943+200-508+\|IPR019775+410-424+\|IPR020472+281-295_368-382_410-424+\|IPR036322+234-505+\|IPR038959+6-505+	SM00320+205-252_255-294_297-336_339-381_384-423_428-465_468-507+\|SM00504+3-85+	PF00400+259-294_307-334_356-381_388-423_471-505+WD_domain,_G-beta_repeat\|PF08606+71-136+Prp19/Pso4-like	G3DSA:3.30.40.10:FF:000027+4-60+Pre-mRNA-processing_factor_19,_putative	PTHR43995+6-505+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-514	4lg8_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.501	56268.230	5.072	-12.000	25.875	8.755	49.611	50.389	12.451	13.424	53.891

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey60	2184.066	2018.278	1683.224	2806.082	3236.795	2568.881	2896.014	1568.333	1744.080	1955.628	1864.964

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.491	0.338	0.846	0.174	-0.319	0.184	-0.815	1.028	—	—	—	—	—

No JSON data available for plots.

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