Hg_chrom7_TN10mRNA_13645
Organism: Heterodera glycines Gene Locus: chr7:3607181-3608158 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.722 | 0.578 | 0.565 | 0.643 | 1.035 | 0.796 | 0.37 | 1.553 | 0.552 | 1.595 | 0.659 | 1.827 | 1.553 | 1.911 | 2.408 | 0.976 | 1.12 | 0.847 | 1.911 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12867
|
— | — |
1.556
|
1.000
|
4.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— | — | — | — |
20-60
|
0.997
|
— | — |
0.001
|
— | — |
0.362
|
0.594
|
0.046
|
0.474
|
0.372
|
0.050
|
0.370
|
0.022
|
0.030
|
0.823
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000004
|
1.000
|
94.000
|
Hsc_gene_10937.t1;Hsc_gene_11326.t1;Hsc_gene_11372.t1;Hsc_gene_11549.t1;Hsc_gene_11791.t1;Hsc_gene_12056.t1;Hsc_gene_12057.t1;Hsc_gene_12594.t1;Hsc_gene_12615.t1;Hsc_gene_12888.t1;Hsc_gene_1295.t1;Hsc_gene_13289.t1;Hsc_gene_13291.t1;Hsc_gene_13577.t1;Hsc_gene_13642.t1;Hsc_gene_13660.t1;Hsc_gene_13681.t1;Hsc_gene_14525.t1;Hsc_gene_14525.t2;Hsc_gene_14525.t3;Hsc_gene_1483.t1;Hsc_gene_14918.t1;Hsc_gene_14967.t1;Hsc_gene_15725.t1;Hsc_gene_15948.t1;Hsc_gene_15968.t1;Hsc_gene_16297.t1;Hsc_gene_16608.t1;Hsc_gene_16608.t2;Hsc_gene_16608.t3;Hsc_gene_16815.t1;Hsc_gene_1688.t1;Hsc_gene_16995.t1;Hsc_gene_16998.t1;Hsc_gene_17512.t1;Hsc_gene_17828.t1;Hsc_gene_17920.t1;Hsc_gene_17970.t1;Hsc_gene_18662.t1;Hsc_gene_18953.t1;Hsc_gene_19180.t1;Hsc_gene_1924.t1;Hsc_gene_19325.t1;Hsc_gene_20535.t1;Hsc_gene_20790.t1;Hsc_gene_21816.t1;Hsc_gene_22006.t1;Hsc_gene_22200.t1;Hsc_gene_2237.t1;Hsc_gene_22434.t1;Hsc_gene_22832.t1;Hsc_gene_24696.t1;Hsc_gene_24927.t1;Hsc_gene_24927.t2;Hsc_gene_24935.t1;Hsc_gene_24975.t1;Hsc_gene_24984.t1;Hsc_gene_25213.t1;Hsc_gene_25605.t1;Hsc_gene_25606.t1;Hsc_gene_25678.t1;Hsc_gene_25689.t1;Hsc_gene_25801.t1;Hsc_gene_26609.t1;Hsc_gene_26649.t1;Hsc_gene_2841.t1;Hsc_gene_2896.t1;Hsc_gene_2935.t1;Hsc_gene_2947.t1;Hsc_gene_3616.t1;Hsc_gene_3808.t1;Hsc_gene_4082.t1;Hsc_gene_4137.t1;Hsc_gene_4138.t1;Hsc_gene_4865.t1;Hsc_gene_4865.t2;Hsc_gene_5427.t1;Hsc_gene_5516.t1;Hsc_gene_5632.t1;Hsc_gene_5670.t1;Hsc_gene_5706.t1;Hsc_gene_6049.t1;Hsc_gene_6928.t1;Hsc_gene_7639.t1;Hsc_gene_7645.t1;Hsc_gene_7902.t1;Hsc_gene_813.t1;Hsc_gene_8959.t1;Hsc_gene_9124.t1;Hsc_gene_9140.t1;Hsc_gene_9180.t1;Hsc_gene_9416.t1;Hsc_gene_9573.t1;Hsc_gene_9599.t1
|
Hsc_gene_12615.t1;Hsc_gene_13289.t1;Hsc_gene_13291.t1;Hsc_gene_17920.t1;Hsc_gene_17970.t1;Hsc_gene_1924.t1;Hsc_gene_19325.t1;Hsc_gene_25689.t1;Hsc_gene_5670.t1;Hsc_gene_9140.t1;Hsc_gene_9416.t1
|
— | — |
CAD2196041.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
50-161
|
1.000
|
1-49
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
18681.780
|
11.402
|
13.500
|
28.571
|
11.180
|
47.826
|
52.174
|
19.255
|
9.317
|
45.963
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
296.554
|
129.687
|
282.096
|
209.470
|
171.021
|
157.549
|
115.206
|
260.855
|
29.080
|
778.405
|
457.266
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.890
|
0.555
|
-0.320
|
-0.324
|
— |
-0.442
|
0.623
|
-1.037
|
-4.884
|
— | — | — | — |
No JSON data available for plots.