Hg_chrom7_TN10mRNA_13646
Organism: Heterodera glycines Gene Locus: chr7:3608378-3609748 Feature type: polypeptideProtein Sequence
Length: 249
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.7 | 1.401 | 0.584 | 0.415 | 1.406 | 0.515 | 1.243 | 0.402 | 1.785 | 1.628 | 0.974 | 2.835 | 1.339 | 0.386 | 1.065 | 0.975 | 0.395 | 1.095 | 1.236 | 0.118 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12868
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.957
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.286
|
0.067
|
0.031
|
0.216
|
0.668
|
0.337
|
0.394
|
0.186
|
0.453
|
0.140
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011019
|
1.000
|
1.000
|
Hsc_gene_2020.t1
|
Hsc_gene_2019.t1
|
— |
Q10051.2 Pre-mRNA-processing factor 19 [Caenorhabditis elegans]
|
KAI1729146.1 WD domain, g-beta repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.110
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000398|GO:0000974|GO:0004842|GO:0006281|GO:0016567|GO:0061630
|
GO:0008150_0.861|GO:0005575_0.853|GO:0110165_0.852|GO:0016020_0.815|GO:0005622_0.715|GO:0043226_0.701|GO:0043229_0.676|GO:0043227_0.671|GO:0043231_0.659|GO:0009987_0.591
|
IPR003613+3-69+|IPR013083+4-61+|IPR038959+3-60+
|
SM00504+3-69+
|
— |
G3DSA:3.30.40.10:FF:000027+4-60+Pre-mRNA-processing_factor_19,_putative
|
PTHR43995+3-60+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-249
|
8ro1_t
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.787
|
27480.170
|
7.116
|
1.000
|
24.096
|
7.631
|
41.365
|
58.635
|
12.450
|
11.647
|
45.382
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
blue
|
1557.944
|
448.426
|
364.301
|
382.688
|
369.861
|
248.318
|
227.502
|
390.569
|
388.238
|
5612.954
|
3373.790
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.528
|
-0.366
|
0.178
|
— |
-0.559
|
— |
0.550
|
-0.637
|
-3.985
|
— |
-3.634
|
— | — |
No JSON data available for plots.