Hg_chrom7_TN10mRNA_13649
Organism: Heterodera glycines Gene Locus: chr7:3619931-3625814 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.327 | 1.327 | 0.939 | 0.469 | 1.042 | 1.254 | 1.068 | 1.087 | 1.208 | 1.212 | 0.823 | 1.279 | 0.755 | 0.47 | 1.22 | 0.854 | 1.381 | 0.906 | 0.0 | 0.16 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12871
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.994
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.425
|
0.244
|
0.075
|
0.633
|
0.215
|
0.202
|
0.098
|
0.133
|
0.136
|
0.055
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011022
|
1.000
|
1.000
|
Hsc_gene_1997.t1
|
Hsc_gene_1997.t1
|
— | — |
KAI1729616.1 thioesterase superfamily domain-containing protein [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0047617
|
GO:0008150_0.932|GO:0005575_0.900|GO:0110165_0.886|GO:0016020_0.801|GO:0005622_0.793|GO:0043226_0.736|GO:0005737_0.727|GO:0043229_0.717|GO:0043227_0.694|GO:0043231_0.682|GO:0009987_0.608|GO:0008152_0.511
|
IPR003736+243-339+|IPR006683+73-148_266-340+|IPR029069+31-154_234-348+|IPR039298+232-349+
|
— |
PF03061+73-148_266-340+Thioesterase_superfamily
|
— |
PTHR21660+232-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29;166-236;343-368
|
2.000
|
30-165;237-342
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
39307.390
|
7.428
|
4.000
|
25.000
|
5.435
|
50.000
|
50.000
|
13.587
|
11.413
|
55.435
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
825.494
|
370.291
|
531.048
|
543.611
|
785.836
|
953.944
|
768.254
|
963.889
|
1631.636
|
543.983
|
1010.120
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.290
|
0.417
|
0.142
|
0.500
|
0.294
|
-0.301
|
— | — | — |
-1.423
|
— | — | — |
No JSON data available for plots.