Hg_chrom7_TN10mRNA_13650
Organism: Heterodera glycines Gene Locus: chr7:3623170-3624366 Feature type: polypeptideProtein Sequence
Length: 381
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.824 | 1.343 | 0.62 | 0.724 | 0.262 | 1.211 | 0.406 | 2.231 | 1.691 | 1.454 | 0.477 | 0.618 | 1.094 | 1.464 | 1.286 | 1.312 | 1.85 | 0.557 | 1.211 | 0.386 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12872
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — |
48-87
|
0.986
|
— | — |
0.000
|
— | — |
0.724
|
0.479
|
0.168
|
0.532
|
0.308
|
0.032
|
0.088
|
0.004
|
0.182
|
0.083
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002072
|
4.000
|
0.000
|
0.000
|
— | — |
P21329.1 RNA-directed DNA polymerase from mobile element jockey [Drosophila funebris]
|
WP_333764851.1 reverse transcriptase domain-containing protein [Streptomyces sp. IBSBF 2390]
|
No
|
-0.210
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.944|GO:0009987_0.889|GO:0003674_0.845|GO:0008152_0.801|GO:0044238_0.784|GO:0043170_0.777|GO:0044237_0.775|GO:0009058_0.772|GO:0044249_0.760|GO:0009059_0.756|GO:0006139_0.744|GO:0034654_0.731|GO:0090304_0.726|GO:0141187_0.724|GO:0003824_0.698|GO:0006259_0.676|GO:0016740_0.676|GO:0006278_0.670|GO:0006310_0.670|GO:0006313_0.670|GO:0032196_0.670|GO:0071897_0.670|GO:0016772_0.656|GO:0140640_0.654|GO:0003964_0.650|GO:0016779_0.650|GO:0034061_0.650|GO:0140097_0.650
|
IPR000477+1-114_2-86+|IPR043502+3-139+|IPR052560+1-215+
|
— |
PF00078+2-86+Reverse_transcriptase_(RNA-dependent_DNA_polymerase)
|
— |
PTHR36688+1-215+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-381
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.872
|
42395.630
|
10.528
|
25.500
|
18.898
|
11.286
|
49.869
|
50.131
|
13.911
|
4.987
|
53.543
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.