SCN Proteipedia

Hg_chrom7_TN10mRNA_13651

Organism: Heterodera glycines Gene Locus: chr7:3626035-3626944 Feature type: polypeptide

Protein Sequence

Length: 150

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.543	0.775	0.364	1.149	0.667	0.513	0.794	2.0	0.889	1.171	0.909	1.176	1.852	2.308	1.361	2.667	0.109	0.303	1.538	0.196	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12873	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.997

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	—	—	—	68-91	0.999	—	—	0.000	—	—	0.651	0.178	0.175	0.481	0.080	0.102	0.023	0.259	0.045	0.137

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0011023	1.000	1.000	Hsc_gene_1996.t1	—	—	P17431.1 mRNA decay activator protein ZFP36L1 [Rattus norvegicus]	POM68321.1 Ccch-type zn-finger protein [Phytophthora palmivora]	No	0.010

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003729\|GO:0046872	GO:0008150_0.888\|GO:0065007_0.845\|GO:0050789_0.835\|GO:0009987_0.829\|GO:0050794_0.829\|GO:0005575_0.813\|GO:0110165_0.805\|GO:0005622_0.748\|GO:0008152_0.738\|GO:0019222_0.738\|GO:0031323_0.738\|GO:0044237_0.738\|GO:0043170_0.727\|GO:0060255_0.727\|GO:0009058_0.719\|GO:0009059_0.719\|GO:0010467_0.719\|GO:0044249_0.719\|GO:0009889_0.705\|GO:0031326_0.705\|GO:0010556_0.704\|GO:0010468_0.701\|GO:0044238_0.690\|GO:0080090_0.689\|GO:0003674_0.670\|GO:0005488_0.670\|GO:0006139_0.637\|GO:0090304_0.631\|GO:0016070_0.627\|GO:0048518_0.621\|GO:0048519_0.612\|GO:0048523_0.600\|GO:0043226_0.590\|GO:0043229_0.588\|GO:0003676_0.583\|GO:0097159_0.583\|GO:0019219_0.574\|GO:0016020_0.573\|GO:0051252_0.570\|GO:0003723_0.544\|GO:0005737_0.534\|GO:0009892_0.525\|GO:0043227_0.523\|GO:0009893_0.520\|GO:0031324_0.519\|GO:0010605_0.517\|GO:0043231_0.517\|GO:0009890_0.511\|GO:0031327_0.511\|GO:0010558_0.509\|GO:0010604_0.508	IPR000571+38-65_38-66_39-65+\|IPR036855+36-70+\|IPR045877+24-81+	SM00356+38-65+	PF00642+39-65+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)	G3DSA:4.10.1000.10:FF:000001+32-71+zinc_finger_CCCH_domain-containing_protein_15-like	PTHR12547+24-81+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	150-150	1.000	1-149	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.979	16536.920	10.542	13.000	22.667	13.333	47.333	52.667	16.667	6.000	53.333

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	yellow	1410.479	1252.425	843.240	985.226	969.654	770.624	821.611	1086.166	688.483	3131.129	2084.281

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.801	-0.483	0.334	—	-0.317	—	0.391	-0.260	-2.276	—	—	—	—

No JSON data available for plots.

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