Hg_chrom7_TN10mRNA_13653
Organism: Heterodera glycines Gene Locus: chr7:3637836-3639206 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.847 | 0.77 | 0.903 | 0.457 | 1.325 | 0.425 | 0.71 | 1.325 | 1.472 | 1.566 | 1.204 | 2.143 | 0.644 | 1.274 | 1.081 | 0.804 | 0.923 | 1.054 | 0.0 | 0.779 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12875
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — |
24-44
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.696
|
0.467
|
0.034
|
0.588
|
0.103
|
0.048
|
0.139
|
0.056
|
0.072
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002402
|
3.000
|
1.000
|
Hsc_gene_1992.t1
|
Hsc_gene_1992.t1
|
— |
Q6ZLC4.1 Phosphopantetheine adenylyltransferase 1 [Oryza sativa Japonica Group]
|
KAH7727799.1 dephospho-CoA kinase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0009058
|
GO:0008150_0.719|GO:0005575_0.710|GO:0110165_0.706|GO:0003674_0.682|GO:0009987_0.662|GO:0005622_0.647|GO:0016020_0.623|GO:0005737_0.600|GO:0043226_0.595|GO:0008152_0.584|GO:0043229_0.569|GO:0003824_0.562|GO:0044237_0.558|GO:0044238_0.558|GO:0009058_0.548|GO:0043227_0.539|GO:0043231_0.528|GO:0044249_0.525|GO:0006139_0.512|GO:0016740_0.510
|
IPR004821+129-255+|IPR014729+127-278+
|
— |
PF01467+129-255+Cytidylyltransferase-like
|
G3DSA:3.40.50.620:FF:000089+127-279+Bifunctional_coenzyme_A_synthase
|
PTHR10695+125-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
276-302
|
1.000
|
1-275
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.694
|
33526.100
|
7.797
|
5.000
|
28.808
|
7.616
|
45.033
|
54.967
|
15.894
|
12.914
|
47.682
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
133.279
|
74.666
|
92.633
|
66.950
|
60.717
|
60.838
|
217.363
|
225.895
|
40.788
|
252.855
|
161.969
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.294
|
-0.361
|
— | — |
1.849
|
1.788
|
— |
-2.748
|
— | — | — | — |
No JSON data available for plots.