Hg_chrom7_TN10mRNA_13654
Organism: Heterodera glycines Gene Locus: chr7:3639901-3643218 Feature type: polypeptideProtein Sequence
Length: 498
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.957 | 1.027 | 0.986 | 0.554 | 1.506 | 0.618 | 0.622 | 1.205 | 1.517 | 1.384 | 1.247 | 1.654 | 0.725 | 0.811 | 1.188 | 0.688 | 0.757 | 1.217 | 0.618 | 0.65 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12876
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.883
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RKSKRKI,RIRKSKRK
|
29-49
|
0.982
|
— | — | — | — |
0.000
|
— | — |
0.473
|
0.386
|
0.021
|
0.719
|
0.166
|
0.084
|
0.143
|
0.066
|
0.108
|
0.092
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002402
|
3.000
|
1.000
|
Hsc_gene_1992.t1
|
Hsc_gene_1992.t1
|
— |
Q9DBL7.2 Bifunctional coenzyme A synthase [Mus musculus]
|
KAH7727799.1 dephospho-CoA kinase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824|GO:0004140|GO:0005524|GO:0009058|GO:0015937
|
GO:0005575_0.736|GO:0110165_0.731|GO:0003674_0.679|GO:0008150_0.674|GO:0005622_0.673|GO:0005737_0.632|GO:0009987_0.612|GO:0016020_0.594|GO:0003824_0.589|GO:0043226_0.568|GO:0043229_0.546|GO:0008152_0.540|GO:0043227_0.517|GO:0044238_0.517|GO:0016740_0.512|GO:0044237_0.512|GO:0009058_0.501
|
IPR001977+299-492_300-468_301-483_301-498+|IPR004821+134-255+|IPR014729+132-283+|IPR027417+297-498_301-487+
|
— |
PF01121+300-468+Dephospho-CoA_kinase|PF01467+134-255+Cytidylyltransferase-like
|
G3DSA:3.40.50.620:FF:000089+132-284+Bifunctional_coenzyme_A_synthase
|
PTHR10695+130-272+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-498
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
55964.800
|
7.076
|
4.000
|
30.924
|
8.032
|
47.189
|
52.811
|
16.466
|
14.458
|
46.586
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightcyan
|
1025.550
|
812.412
|
688.978
|
767.746
|
934.008
|
1085.146
|
1163.929
|
1047.018
|
574.652
|
1618.581
|
1171.182
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.468
|
-0.219
|
0.265
|
0.251
|
0.231
|
— | — |
0.297
|
— | — | — | — | — |
No JSON data available for plots.