Hg_chrom7_TN10mRNA_13655
Organism: Heterodera glycines Gene Locus: chr7:3643522-3647002 Feature type: polypeptideProtein Sequence
Length: 533
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.069 | 0.873 | 1.501 | 0.065 | 2.627 | 1.443 | 1.05 | 1.22 | 0.709 | 0.507 | 0.711 | 2.318 | 0.417 | 0.577 | 1.723 | 1.153 | 0.677 | 0.512 | 0.289 | 0.441 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12877
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.993
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.933
|
0.053
|
0.011
|
0.262
|
0.052
|
0.054
|
0.073
|
0.002
|
0.039
|
0.046
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004541
|
1.000
|
2.000
|
Hsc_gene_1991.t1;Hsc_gene_1991.t2
|
— | — |
Q6NYV9.1 RNA polymerase-associated protein LEO1 [Danio rerio]
|
KAI3410088.1 Paf1 complex component [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006368|GO:0016593
|
GO:0008150_0.858|GO:0009987_0.776|GO:0005575_0.732|GO:0110165_0.731|GO:0005622_0.698|GO:0043226_0.636|GO:0032502_0.635|GO:0016020_0.628|GO:0032501_0.619|GO:0043229_0.610|GO:0005634_0.561|GO:0043227_0.561|GO:0043231_0.561|GO:0065007_0.533|GO:0050789_0.526|GO:0048856_0.525|GO:0007275_0.507
|
IPR007149+23-531_212-373+
|
— |
PF04004+212-373+Leo1-like_protein
|
— |
PTHR23146+23-531+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-275;319-533
|
1.000
|
276-318
|
9s3g_U
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
59440.790
|
4.302
|
-51.500
|
39.587
|
5.816
|
61.163
|
38.837
|
15.572
|
24.015
|
48.780
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2025.633
|
5052.862
|
2576.074
|
1840.724
|
1902.246
|
1847.022
|
1666.235
|
1279.909
|
2867.017
|
649.978
|
1600.138
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.203
|
-1.594
|
-0.375
|
— | — | — |
-0.635
|
0.524
|
2.045
|
— | — | — | — |
No JSON data available for plots.