Hg_chrom7_TN10mRNA_13656
Organism: Heterodera glycines Gene Locus: chr7:3647788-3650682 Feature type: polypeptideProtein Sequence
Length: 335
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.972 | 1.041 | 1.085 | 1.029 | 1.045 | 1.225 | 0.746 | 1.194 | 1.061 | 1.008 | 0.859 | 0.878 | 1.575 | 0.861 | 1.279 | 0.64 | 0.881 | 1.312 | 0.689 | 0.966 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12878
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.364
|
0.264
|
0.262
|
0.604
|
0.119
|
0.191
|
0.109
|
0.145
|
0.243
|
0.101
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004542
|
2.000
|
1.000
|
Hsc_gene_1990.t1
|
Hsc_gene_1990.t1;Hsc_gene_1990.t2
|
— |
G5EER4.1 GDP-L-fucose synthase [Caenorhabditis elegans]
|
KAI3410089.1 GRR1-like protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009226|GO:0016491
|
GO:0008150_0.893|GO:0009987_0.820|GO:0003674_0.751|GO:0003824_0.662|GO:0008152_0.627|GO:0044238_0.608|GO:0044237_0.599|GO:0009058_0.586|GO:0044281_0.547|GO:0016491_0.546|GO:0006139_0.539|GO:0006793_0.531|GO:0006796_0.531|GO:1901135_0.531|GO:0016614_0.529|GO:0016616_0.528|GO:0034654_0.527|GO:0019637_0.521|GO:1901137_0.513|GO:0006753_0.512|GO:0055086_0.512|GO:0090407_0.510|GO:1901293_0.503
|
IPR001509+19-251+|IPR028614+16-328_18-327+|IPR036291+18-332+
|
— |
PF01370+19-251+NAD_dependent_epimerase/dehydratase_family
|
— |
PTHR43238+15-332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-5
|
1.000
|
6-335
|
4e5y_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.586
|
37728.010
|
7.090
|
3.000
|
26.567
|
12.239
|
45.672
|
54.328
|
14.328
|
12.239
|
51.045
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
1169.923
|
185.265
|
135.082
|
143.095
|
112.587
|
2985.238
|
8434.378
|
721.664
|
302.516
|
122.534
|
199.669
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.686
|
-0.510
|
— |
-0.375
|
4.740
|
1.510
|
-2.168
|
3.696
|
— | — | — | — | — |
No JSON data available for plots.