Hg_chrom7_TN10mRNA_13657
Organism: Heterodera glycines Gene Locus: chr7:3651101-3653665 Feature type: polypeptideProtein Sequence
Length: 335
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.937 | 1.18 | 0.923 | 0.926 | 1.144 | 1.225 | 0.711 | 1.493 | 0.995 | 1.008 | 0.814 | 0.878 | 1.575 | 0.918 | 1.218 | 0.725 | 0.881 | 1.402 | 0.689 | 0.79 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12879
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.630
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.345
|
0.323
|
0.239
|
0.608
|
0.147
|
0.172
|
0.137
|
0.126
|
0.242
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004542
|
2.000
|
1.000
|
Hsc_gene_1990.t1
|
Hsc_gene_1990.t1
|
— |
G5EER4.1 GDP-L-fucose synthase [Caenorhabditis elegans]
|
KAI3410089.1 GRR1-like protein 1 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009226|GO:0016491
|
GO:0008150_0.891|GO:0009987_0.827|GO:0003674_0.744|GO:0003824_0.648|GO:0008152_0.623|GO:0044238_0.607|GO:0044237_0.598|GO:0009058_0.587|GO:0016491_0.543|GO:0044281_0.543|GO:0006139_0.540|GO:0006793_0.530|GO:0006796_0.530|GO:1901135_0.529|GO:0016614_0.527|GO:0034654_0.527|GO:0016616_0.526|GO:0019637_0.519|GO:1901137_0.511|GO:0006753_0.510|GO:0055086_0.510|GO:0090407_0.509|GO:1901293_0.502
|
IPR001509+19-251+|IPR028614+16-328_18-327+|IPR036291+18-332+
|
— |
PF01370+19-251+NAD_dependent_epimerase/dehydratase_family
|
— |
PTHR43238+14-332+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4
|
1.000
|
5-335
|
4e5y_D
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.610
|
37657.860
|
6.985
|
3.000
|
26.269
|
12.239
|
46.567
|
53.433
|
14.328
|
11.940
|
51.343
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
yellow
|
962.228
|
162.363
|
628.834
|
458.740
|
330.688
|
1203.754
|
2060.856
|
779.148
|
2181.321
|
464.614
|
1200.345
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.724
|
1.361
|
-0.347
|
-0.504
|
1.877
|
0.788
|
-0.731
|
1.547
|
— |
-2.078
|
— | — | — |
No JSON data available for plots.