Hg_chrom7_TN10mRNA_13658
Organism: Heterodera glycines Gene Locus: chr7:3653917-3658399 Feature type: polypeptideProtein Sequence
Length: 505
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.105 | 0.737 | 0.936 | 0.751 | 0.99 | 1.117 | 0.684 | 2.079 | 0.924 | 1.097 | 0.9 | 0.932 | 1.43 | 0.876 | 0.889 | 1.499 | 0.779 | 1.32 | 0.457 | 0.408 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12880
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — |
14-42
|
0.999
|
— | — |
0.000
|
— | — |
0.599
|
0.231
|
0.075
|
0.606
|
0.110
|
0.206
|
0.130
|
0.064
|
0.060
|
0.020
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011024
|
1.000
|
1.000
|
Hsc_gene_1989.t1
|
Hsc_gene_1989.t1
|
— |
Q19087.1 Aspartyl aminopeptidase [Caenorhabditis elegans]
|
KAI1710417.1 aminopeptidase I zinc metalloprotease (M18) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004177|GO:0006508|GO:0008270
|
GO:0005575_0.907|GO:0110165_0.898|GO:0005622_0.836|GO:0008150_0.805|GO:0005737_0.781|GO:0003674_0.731|GO:0016020_0.615|GO:0003824_0.614|GO:0016787_0.564|GO:0140096_0.548|GO:0008233_0.541|GO:0009987_0.535|GO:0008152_0.532|GO:0004177_0.526|GO:0008238_0.526|GO:0043226_0.514|GO:0043229_0.508
|
IPR001948+29-496_38-490_103-119_136-156_175-192_326-344_368-384_457-472+|IPR023358+113-274+
|
— |
PF02127+38-490+Aminopeptidase_I_zinc_metalloprotease_(M18)
|
G3DSA:2.30.250.10:FF:000001+114-275+Aspartyl_aminopeptidase_1
|
PTHR28570+29-496+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-505
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
55120.520
|
7.052
|
6.500
|
25.545
|
11.287
|
48.317
|
51.683
|
14.455
|
11.089
|
54.257
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1863.906
|
2312.767
|
1334.103
|
2092.991
|
2531.038
|
2360.142
|
3238.301
|
1979.407
|
954.819
|
1495.195
|
1263.605
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.023
|
-0.281
|
0.758
|
0.242
|
— |
0.467
|
-0.360
|
0.854
|
— | — | — | — | — |
No JSON data available for plots.