Hg_chrom7_TN10mRNA_13660
Organism: Heterodera glycines Gene Locus: chr7:3666105-3667861 Feature type: polypeptideProtein Sequence
Length: 158
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.178 | 1.325 | 1.266 | 0.436 | 1.793 | 0.974 | 0.301 | 0.316 | 1.266 | 1.112 | 1.438 | 0.745 | 0.879 | 0.487 | 1.679 | 0.542 | 0.519 | 1.438 | 1.947 | 0.186 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12882
|
— | — |
1.222
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Not_Clustered
|
0.635
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— |
RKSKRKI,RIRKSKRK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.427
|
0.382
|
0.026
|
0.594
|
0.113
|
0.084
|
0.139
|
0.290
|
0.135
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002402
|
3.000
|
1.000
|
Hsc_gene_1992.t1
|
Hsc_gene_1992.t1
|
— |
Q9DBL7.2 Bifunctional coenzyme A synthase [Mus musculus]
|
KAH7727799.1 dephospho-CoA kinase family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004140|GO:0005524|GO:0015937
|
GO:0003674_0.756|GO:0005575_0.727|GO:0110165_0.723|GO:0005622_0.664|GO:0003824_0.648|GO:0008150_0.637|GO:0005737_0.622|GO:0016740_0.602|GO:0016772_0.584|GO:0016779_0.584|GO:0004140_0.576|GO:0004595_0.576|GO:0016301_0.576|GO:0016773_0.576|GO:0070566_0.576|GO:0009987_0.570|GO:0016020_0.557|GO:0043226_0.535|GO:0043229_0.511
|
IPR001977+1-158_5-128_5-143+|IPR027417+1-157_5-148+
|
— |
PF01121+5-128+Dephospho-CoA_kinase
|
— |
PTHR10695+5-142+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
148-158
|
1.000
|
1-147
|
2f6r_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.585
|
18235.860
|
6.968
|
0.500
|
36.076
|
6.962
|
52.532
|
47.468
|
18.354
|
17.722
|
45.570
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
122.639
|
181.977
|
123.516
|
130.540
|
178.782
|
170.534
|
163.496
|
171.397
|
21.794
|
100.111
|
66.546
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.789
|
-0.617
|
— |
0.420
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.