SCN Proteipedia

Hg_chrom7_TN10mRNA_13661

Organism: Heterodera glycines Gene Locus: chr7:3668497-3670401 Feature type: polypeptide

Protein Sequence

Length: 231

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.856	0.805	0.708	0.597	1.443	1.443	0.979	1.082	1.251	1.404	1.049	1.019	1.082	0.749	1.325	1.113	0.923	0.656	0.333	0.509	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom7_TN10gene_12883	—	—	0.667	—	1.000	1.000	—	1.000	1.000	1.000	—	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Not_Clustered	0.618

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	KGKGR	—	—	19-42	0.999	—	—	0.000	—	—	0.837	0.121	0.005	0.427	0.034	0.011	0.033	0.001	0.047	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002403	2.000	2.000	Hsc_gene_1978.t1;Hsc_gene_1993.t1	—	—	—	KAI1713499.1 transcription factor AP-2 domain-containing protein [Ditylenchus destructor]	No	0.090

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	Yes	GO:0003700\|GO:0005634\|GO:0006355	GO:0008150_0.875\|GO:0009987_0.824\|GO:0005575_0.724\|GO:0065007_0.721\|GO:0110165_0.719\|GO:0050789_0.706\|GO:0050794_0.691\|GO:0005622_0.689\|GO:0003674_0.684\|GO:0008152_0.679\|GO:0044238_0.667\|GO:0044237_0.660\|GO:0009058_0.655\|GO:0043170_0.653\|GO:0005488_0.645\|GO:0043226_0.638\|GO:0044249_0.637\|GO:0006139_0.634\|GO:0009059_0.634\|GO:0019222_0.632\|GO:0010467_0.631\|GO:0048518_0.631\|GO:0031323_0.630\|GO:0060255_0.626\|GO:0048522_0.621\|GO:0080090_0.621\|GO:0034654_0.616\|GO:0043229_0.614\|GO:0090304_0.613\|GO:0009889_0.612\|GO:0031326_0.612\|GO:0016070_0.608\|GO:0010556_0.607\|GO:0141187_0.606\|GO:0009893_0.602\|GO:0010468_0.602\|GO:0032774_0.598\|GO:0019219_0.594\|GO:0031325_0.594\|GO:0009891_0.592\|GO:0010604_0.591\|GO:0032501_0.591\|GO:0006351_0.589\|GO:0051252_0.589\|GO:0031328_0.588\|GO:0006355_0.587\|GO:2001141_0.587\|GO:0010557_0.585\|GO:0032502_0.583\|GO:0045935_0.576\|GO:0051254_0.573\|GO:0006366_0.571\|GO:0006357_0.570\|GO:1902680_0.570\|GO:0045893_0.569\|GO:0045944_0.562\|GO:0016020_0.560\|GO:0097159_0.549\|GO:0003676_0.536\|GO:0048856_0.533\|GO:0003677_0.512\|GO:0043227_0.512\|GO:0043565_0.512\|GO:0003690_0.509\|GO:1990837_0.509\|GO:0007275_0.507\|GO:0048731_0.502	IPR004979+32-225+\|IPR013854+33-224+	—	PF03299+33-224+Transcription_factor_AP-2	—	PTHR10812+32-225+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-29	1.000	30-231	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.780	25621.160	8.142	4.500	28.139	8.225	50.649	49.351	15.584	12.554	46.320

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	brown	195.810	550.091	192.483	212.889	229.243	348.851	225.278	377.551	26.063	35.977	31.728

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.745	-1.507	0.255	—	0.621	-0.620	—	-0.603	—	—	3.936	—	—

No JSON data available for plots.

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