Hg_chrom7_TN10mRNA_13665
Organism: Heterodera glycines Gene Locus: chr7:3694286-3704511 Feature type: polypeptideProtein Sequence
Length: 895
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.234 | 0.702 | 0.63 | 0.578 | 0.633 | 1.347 | 0.971 | 2.123 | 1.018 | 1.193 | 0.525 | 0.789 | 0.559 | 1.569 | 0.981 | 1.74 | 1.007 | 0.83 | 0.602 | 0.592 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12887
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Not_Clustered
|
0.921
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — |
84-104
|
0.982
|
— | — |
0.000
|
— | — |
0.374
|
0.417
|
0.045
|
0.686
|
0.226
|
0.273
|
0.195
|
0.452
|
0.138
|
0.112
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004543
|
1.000
|
2.000
|
Hsc_gene_1985.t1;Hsc_gene_1985.t2
|
Hsc_gene_1985.t1;Hsc_gene_1985.t2;Hsc_gene_1986.t1
|
— |
Q03426.1 Mevalonate kinase [Homo sapiens]
|
KAI1729456.1 mevalonate kinase [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004496|GO:0005524|GO:0005737|GO:0008299
|
GO:0005575_0.786|GO:0110165_0.786|GO:0005622_0.690|GO:0003674_0.626|GO:0016020_0.613|GO:0005737_0.574|GO:0043226_0.537|GO:0008150_0.536|GO:0043229_0.521
|
IPR006204+413-495+|IPR006205+192-766+|IPR013750+674-743+|IPR014721+192-333_391-510+|IPR020568+197-278_367-501+|IPR036554+513-580_515-567_649-757_666-764+
|
— |
PF00288+413-495+GHMP_kinases_N_terminal_domain|PF08544+674-743+GHMP_kinases_C_terminal
|
G3DSA:3.30.70.890:FF:000017+645-757+MeValonate_Kinase
|
PTHR43290+192-766+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-159;327-375;585-646;739-839
|
4.000
|
160-326;376-584;647-738;840-895
|
2r3v_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.943
|
94486.410
|
8.533
|
28.000
|
19.777
|
9.050
|
46.369
|
53.631
|
12.514
|
7.263
|
58.883
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2289.085
|
4313.400
|
4281.279
|
2607.921
|
1936.089
|
2044.532
|
2028.305
|
4480.430
|
1797.029
|
532.489
|
1074.435
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.239
|
-0.863
|
-0.607
|
-0.461
|
— | — |
1.024
|
-1.000
|
1.637
|
— | — | — | — |
No JSON data available for plots.