Hg_chrom7_TN10mRNA_13668
Organism: Heterodera glycines Gene Locus: chr7:3713735-3715903 Feature type: polypeptideProtein Sequence
Length: 399
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.311 | 1.049 | 0.957 | 1.037 | 1.044 | 0.9 | 0.388 | 1.253 | 1.114 | 1.829 | 0.911 | 0.442 | 2.089 | 0.675 | 0.767 | 0.823 | 0.822 | 0.911 | 0.578 | 0.811 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12890
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.878
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
golgi_apparatus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.233
|
0.260
|
0.013
|
0.363
|
0.502
|
0.462
|
0.596
|
0.071
|
0.403
|
0.089
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000826
|
5.000
|
1.000
|
Hsc_gene_1980.t1
|
— | — |
Q96KE9.4 BTB/POZ domain-containing protein 6 [Homo sapiens]
|
KAI3415282.1 BTB/POZ domain-containing protein 3 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.774|GO:0110165_0.773|GO:0008150_0.689|GO:0005622_0.623|GO:0009987_0.577|GO:0005737_0.549|GO:0016020_0.524|GO:0043226_0.514
|
IPR000210+24-101_24-128_24-132+|IPR011333+1-158_23-127+|IPR011705+135-246_142-244+
|
SM00225+24-132+|SM00875+135-246+
|
PF00651+24-128+BTB/POZ_domain|PF07707+142-244+BTB_And_C-terminal_Kelch
|
G3DSA:1.25.40.420:FF:000008+158-264+BTB/POZ_domain-containing_protein_POB1
|
PTHR45774+5-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-399
|
2vkp_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.618
|
44778.710
|
6.176
|
-2.000
|
23.810
|
13.534
|
42.607
|
57.393
|
12.281
|
11.529
|
47.619
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
magenta
|
95.893
|
127.479
|
127.469
|
66.992
|
56.179
|
100.628
|
459.896
|
28.851
|
8.223
|
50.553
|
32.412
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.230
|
-1.065
|
-0.820
|
— |
0.853
|
2.201
|
-1.912
|
4.137
|
— | — | — | — | — |
No JSON data available for plots.