Hg_chrom7_TN10mRNA_13670
Organism: Heterodera glycines Gene Locus: chr7:3720631-3723026 Feature type: polypeptideProtein Sequence
Length: 398
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.139 | 1.402 | 1.051 | 1.126 | 1.047 | 1.482 | 0.598 | 1.633 | 0.782 | 1.392 | 1.142 | 0.739 | 1.675 | 0.58 | 0.974 | 0.718 | 0.824 | 0.914 | 0.773 | 0.369 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12892
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KKTVFTLDTLFEKQLRSKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.439
|
0.253
|
0.027
|
0.766
|
0.171
|
0.348
|
0.167
|
0.015
|
0.103
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011027
|
1.000
|
1.000
|
Hsc_gene_1975.t1
|
Hsc_gene_1975.t1
|
— |
Q9N3Q8.2 Dauer abnormal formation protein 25 [Caenorhabditis elegans]
|
KAI1705691.1 ankyrin repeats (3 copies) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.669|GO:0110165_0.669|GO:0008150_0.614|GO:0005622_0.564|GO:0009987_0.542|GO:0065007_0.514|GO:0043226_0.502
|
IPR002110+52-81_52-84_60-140_86-115_86-118_119-150+|IPR002893+339-375+|IPR036770+2-160_19-142+|IPR052452+17-387+
|
SM00248+52-81_86-115_119-150+
|
PF01753+339-375+MYND_finger|PF12796+60-140+Ankyrin_repeats_(3_copies)
|
— |
PTHR24150+17-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-398
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.603
|
44708.920
|
7.587
|
7.500
|
27.638
|
11.558
|
49.497
|
50.503
|
15.578
|
12.060
|
48.995
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
961.770
|
1104.059
|
1333.450
|
836.061
|
834.668
|
686.578
|
1226.551
|
959.034
|
519.459
|
1200.500
|
908.625
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.538
|
-0.564
|
— |
-0.267
|
0.848
|
0.377
|
0.498
|
— | — | — | — | — |
No JSON data available for plots.