Hg_chrom7_TN10mRNA_13673
Organism: Heterodera glycines Gene Locus: chr7:3728721-3732621 Feature type: polypeptideProtein Sequence
Length: 660
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.705 | 1.198 | 1.377 | 1.045 | 1.187 | 1.243 | 0.631 | 2.121 | 1.212 | 1.515 | 0.574 | 0.713 | 1.136 | 0.699 | 1.515 | 0.909 | 0.845 | 0.781 | 1.282 | 0.446 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12895
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.711
|
0.252
|
0.019
|
0.568
|
0.243
|
0.074
|
0.064
|
0.075
|
0.124
|
0.024
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004544
|
1.000
|
2.000
|
Hsc_gene_1973.t1;Hsc_gene_1973.t2
|
Hsc_gene_1973.t1;Hsc_gene_1973.t2
|
— |
Q8N5D0.2 WD and tetratricopeptide repeats protein 1 [Homo sapiens]
|
KAI3413750.1 WD and tetratricopeptide repeat protein [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.867|GO:0110165_0.862|GO:0005622_0.805|GO:0016020_0.769|GO:0043226_0.732|GO:0043229_0.713|GO:0043227_0.700|GO:0043231_0.683|GO:0008150_0.655|GO:0005634_0.609|GO:0009987_0.568|GO:0065007_0.536|GO:0050789_0.527|GO:0050794_0.501
|
IPR001680+33-72_37-71_40-71_74-116_118-166_483-526_487-525_529-568_536-567+|IPR015943+26-317_473-613+|IPR036322+33-567+|IPR045151+5-647+
|
SM00320+33-72_74-116_118-166_483-526_529-568+
|
PF00400+37-71_487-525_536-567+WD_domain,_G-beta_repeat
|
— |
PTHR15574+5-647+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
625-660
|
1.000
|
1-624
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.615
|
75367.940
|
5.940
|
-9.000
|
30.152
|
11.515
|
51.667
|
48.333
|
15.455
|
14.697
|
47.424
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
tan
|
848.283
|
1277.884
|
857.171
|
793.343
|
959.729
|
850.502
|
1633.936
|
749.052
|
745.865
|
481.232
|
594.646
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.806
|
-0.825
|
— |
0.244
|
— |
0.953
|
— |
1.267
|
— | — | — | — | — |
No JSON data available for plots.