Hg_chrom7_TN10mRNA_13676
Organism: Heterodera glycines Gene Locus: chr7:3736149-3737519 Feature type: polypeptideProtein Sequence
Length: 216
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.646 | 1.077 | 1.094 | 0.479 | 1.389 | 1.543 | 0.551 | 1.62 | 1.029 | 1.251 | 1.543 | 2.451 | 0.772 | 0.979 | 1.039 | 0.992 | 0.835 | 0.772 | 0.0 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom7_TN10gene_12898
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRTLADMENLRKRTQR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.099
|
0.982
|
0.007
|
0.158
|
0.031
|
0.036
|
0.053
|
0.057
|
0.072
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0011031
|
1.000
|
1.000
|
Hsc_gene_1970.t1
|
Hsc_gene_1970.t1
|
— |
Q18421.1 GrpE protein homolog, mitochondrial [Caenorhabditis elegans]
|
XP_024503757.1 GrpE protein homolog 2, mitochondrial [Strongyloides ratti];CEF64556.2 GrpE protein homolog 2, mitochondrial [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000774|GO:0006457|GO:0042803|GO:0051087
|
GO:0005575_0.881|GO:0110165_0.881|GO:0005622_0.810|GO:0005737_0.718|GO:0043226_0.705|GO:0016020_0.698|GO:0043229_0.697|GO:0043227_0.645|GO:0043231_0.626|GO:0003674_0.552|GO:0005488_0.540
|
IPR000740+31-214_39-213_44-214_68-212_75-91_103-118_164-179_167-212_193-212+|IPR009012+156-214_159-214+|IPR013805+37-154_55-156+
|
— |
PF01025+44-214+GrpE
|
G3DSA:2.30.22.10:FF:000001+156-213+Protein_GrpE
|
PTHR21237+39-213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-84;216-216
|
1.000
|
85-215
|
9blu_C
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.723
|
24564.090
|
8.282
|
5.500
|
32.870
|
7.870
|
55.556
|
44.444
|
18.519
|
14.352
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
1299.366
|
595.291
|
811.928
|
1518.952
|
1733.079
|
1334.457
|
1298.560
|
861.828
|
1788.352
|
1285.678
|
1501.110
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.217
|
1.215
|
1.013
|
0.158
|
-0.362
|
— |
-0.735
|
0.734
|
— | — | — | — | — |
No JSON data available for plots.